View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11926_low_2 (Length: 715)
Name: NF11926_low_2
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 579; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 709
Target Start/End: Original strand, 10611826 - 10612517
Alignment:
| Q |
18 |
catatgagattgagtttgagtcttttgattgtgataagatgaaagtttttcgagtatttgttggtcacgagtttcgtttcccannnnnnnnatttctcaa |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10611826 |
catatgagattgagtgtgagtcttttgattgttataagatgaaagtttttcgagtatttgttggtcacgagtttcgtttcccattttttttatttctcaa |
10611925 |
T |
|
| Q |
118 |
tggtttgagagaaaggaacaaagaagaggtagactagaatgtacaagtgaacagaaacattcagaacctgataaacttaagtaaccaagtttcatgtaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10611926 |
tggtttgagagaaaggaacaaagaagaggtagactagaatgtacaagtgaacagaaacattcagaacctgataaacttaagtaaccaagtttcatgtaat |
10612025 |
T |
|
| Q |
218 |
gatgcaccattatctatatttgtttattgccatagtttnnnnnnnncctttcatactttgtgggacatcctgtttttcgatataatataatctcatcagt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612026 |
gatgcaccattatctatatttgtttattgccatggtttaaaaaaaacctttcatactttgtgggacatcctgtttttcgatataatataatctcatcagt |
10612125 |
T |
|
| Q |
318 |
gtcacatggccagccaatttcaactcttgttaaaatttgaatactttatattaatgtggttgttgattttatattcttaatcctatcaacttattatttt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
10612126 |
gtcacatggccagccaatttcaactcttgttaaaatttgaatactttatattaatgtggttgttgattttatattcttaatcctaccaactcattatttt |
10612225 |
T |
|
| Q |
418 |
atatacttctgtccaaatgttggaatcagcatcattattttatcaaccatgtgattgnnnnnnnatttactttcatgctgaaatgaaacaatcactggat |
517 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612226 |
atatacttctgttcaaatgttggaatcggcatcattattttatcaaccatgtgattgtttttttatttactttcatgctgaaatgaaacaatcactggat |
10612325 |
T |
|
| Q |
518 |
aaattaagaaatttaaattatgcagccgttttctccattgatgcagttgttgaaatatttattcattattggcatcaatactatttgattttatgcttat |
617 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612326 |
aaattaagaaattttaattatgcagccgttttctccatcgatgcagttgttgaaatatttattcattattggcatcaatactatttgattttatgcttat |
10612425 |
T |
|
| Q |
618 |
tgtgttttattttaattccttatttcacttattaatttgtggttagtgatggctgcggtggtgtttacggcagcattggagccttcatctca |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
10612426 |
tgtgttttattttaattccttatttcacttattaatttgtggttagtgatggctgcggtggtgtttacggtagcattggagccttcaactca |
10612517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 10603858 - 10603939
Alignment:
| Q |
169 |
cagaaacattcagaacctgataaacttaagtaaccaagtttcatgtaatgatgcaccattatctatatttgtttattgccat |
250 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||||||| ||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
10603858 |
cagaaacattcaaaacctgataaactcaagtgaccaagttacatgtcgtgatgcaccattaactatattttcttattgccat |
10603939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 402
Target Start/End: Original strand, 10603964 - 10604104
Alignment:
| Q |
265 |
ctttcatactttgtgggacatcctgtttttcgatataatataatctcatcagtgtcacatggccagccaatttcaactcttgttaaaatttgaata--ct |
362 |
Q |
| |
|
|||||||||||||| || |||| |||||| |||||||||||||||| ||| |||||| || ||||| |||||||||||||||| ||||| || | |
|
|
| T |
10603964 |
ctttcatactttgtaacacttcctatttttc-atataatataatctcaatagtatcacattgctagccagtttcaactcttgttaacatttgtttaattt |
10604062 |
T |
|
| Q |
363 |
ttatattaatgtggttgttgattttata--ttcttaatccta |
402 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
10604063 |
ttatattaatgtgattgttgactttatatgttcttaatccta |
10604104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 10615342 - 10615392
Alignment:
| Q |
117 |
atggtttgagagaaaggaacaaagaagaggtagactagaatgtacaagtga |
167 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
10615342 |
atggtttaagagaaagaaacaaagaagaggtagactaaaatgtacaagtga |
10615392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 596 - 654
Target Start/End: Original strand, 41240654 - 41240712
Alignment:
| Q |
596 |
tactatttgattttatgcttattgtgttttattttaattccttatttcacttattaatt |
654 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||| |
|
|
| T |
41240654 |
tactatttgattttatgtttattgtattttattttaattccttaaatcacttcttaatt |
41240712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 565 - 638
Target Start/End: Original strand, 30984643 - 30984715
Alignment:
| Q |
565 |
tgttgaaatatttattcattattggcatcaatactatttgattttatgcttattgtgttttattttaattcctt |
638 |
Q |
| |
|
|||||||||||||| |||||||| || || |||||| ||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
30984643 |
tgttgaaatatttaatcattattagc-tcgatactacttgattttatgtttatcatgttttattttaattcctt |
30984715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University