View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11926_low_3 (Length: 696)

Name: NF11926_low_3
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11926_low_3
NF11926_low_3
[»] chr6 (30 HSPs)
chr6 (331-680)||(2974536-2974880)
chr6 (351-672)||(2929846-2930170)
chr6 (331-672)||(2935136-2935482)
chr6 (420-672)||(2996663-2996914)
chr6 (383-678)||(2983397-2983698)
chr6 (383-680)||(2937989-2938271)
chr6 (17-300)||(2997488-2997771)
chr6 (17-333)||(2659091-2659410)
chr6 (58-317)||(2982559-2982818)
chr6 (383-625)||(2965111-2965364)
chr6 (57-318)||(2934285-2934546)
chr6 (500-672)||(2927697-2927869)
chr6 (57-299)||(2951647-2951889)
chr6 (57-318)||(2926846-2927107)
chr6 (373-565)||(2954726-2954921)
chr6 (57-318)||(3003906-3004173)
chr6 (12-299)||(2964193-2964492)
chr6 (331-508)||(2952657-2952831)
chr6 (517-672)||(3003174-3003325)
chr6 (57-289)||(2973728-2973960)
chr6 (331-508)||(3002964-3003141)
chr6 (475-632)||(2658311-2658474)
chr6 (517-664)||(2952481-2952624)
chr6 (383-483)||(2986474-2986575)
chr6 (332-412)||(2979775-2979855)
chr6 (469-520)||(2986421-2986472)
chr6 (629-680)||(2954670-2954721)
chr6 (331-362)||(2965366-2965397)
chr6 (331-360)||(2927956-2927985)
chr6 (331-360)||(2986579-2986608)
[»] chr7 (2 HSPs)
chr7 (388-664)||(3339570-3339850)
chr7 (82-308)||(3338877-3339091)
[»] scaffold0024 (4 HSPs)
scaffold0024 (424-664)||(34537-34775)
scaffold0024 (43-317)||(35344-35618)
scaffold0024 (337-459)||(43551-43680)
scaffold0024 (347-390)||(34257-34300)
[»] chr3 (7 HSPs)
chr3 (518-657)||(49618963-49619102)
chr3 (517-656)||(49613989-49614128)
chr3 (203-320)||(49618079-49618196)
chr3 (57-125)||(49618292-49618361)
chr3 (377-498)||(49619136-49619255)
chr3 (57-125)||(49613312-49613380)
chr3 (383-443)||(49614205-49614267)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-123; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 331 - 680
Target Start/End: Complemental strand, 2974880 - 2974536
Alignment:
Q  331 gttcaacaacaatacaacatgatcaagttgctcgtttgtttagcagaacacctatttatatgaaattacaatttcgatctaatacaacacaaaa---taa 427  Q
    ||||||||||||||||||||||||||||||||  | | ||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||   |||    
T  2974880 gttcaacaacaatacaacatgatcaagttgcttttctatttagcagaactcctatttatatgaaattataatttcaatctaatgcaacacaaaaagataa 2974781  T
Q  428 tgaaaccattgaaacaaacaacgtacattggttgataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactactt 527  Q
    |||||| |||||||||||||||||||||||       ||| ||||   |||||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  2974780 tgaaac-attgaaacaaacaacgtacattg-------ataataatgaaaataattatgaactcaacaatgaaagaaatcactaggatgcttgtactactt 2974689  T
Q  528 gcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgcct 627  Q
    ||||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2974688 gcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgcct 2974589  T
Q  628 tagagcagccttcaacttatgccaaggattcctacaataagcattcaattctt 680  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2974588 tagagcagccttcaacctatgccaaggattcctacaataagcattcaattctt 2974536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 351 - 672
Target Start/End: Complemental strand, 2930170 - 2929846
Alignment:
Q  351 gatcaagttgctcgtttgtttagcagaacacctatttatatgaaattacaatttcgatctaatacaacaca--aaataatgaaaccattgaaacaaacaa 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||    
T  2930170 gatcaagttgctcgtttgtttagcagaacacctatttatatgaaattacaattttgatctaatacaacacacaaaataatgaaaccattgaaacaaacaa 2930071  T
Q  449 cgtacattggttgataatactaatagcaataattatgaactaaacaatgaaagaaatca--cttggaggcttgtactacttgcaagacagaacaaactgt 546  Q
    ||||||||||| |||||||  |||| ||||||||||||||| |||||| ||||||||||  || |||||||||||| ||||||||||||||||||||||     
T  2930070 cgtacattggt-gataataagaataacaataattatgaactcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactga 2929972  T
Q  547 ttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaactta 646  Q
    ||||| || |||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||| | |||||||||||||| |||| |||||||||| ||    
T  2929971 ttgaagtaaagtgagaaaaagtagtaagaatccagcaatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagccttcaaccta 2929872  T
Q  647 tgccaaggattcctacaataagcatt 672  Q
    ||||||||||||  |||| |||||||    
T  2929871 tgccaaggattctaacaaaaagcatt 2929846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 331 - 672
Target Start/End: Complemental strand, 2935482 - 2935136
Alignment:
Q  331 gttcaacaacaatacaacatgatcaagttgctcgtttgtttagcagaacacctatttatatgaaattacaatttcgatctaatacaacacaaaa---taa 427  Q
    ||||||||||||||||||||||||||  ||||  ||| |||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||   |||    
T  2935482 gttcaacaacaatacaacatgatcaatatgcttttttatttaacagaacacccatttatatgaaattacaatttcaatctaatgcaacacaaaaagataa 2935383  T
Q  428 tgaaaccattgaaacaaacaacgtacattggttgataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgt---acta 524  Q
    ||||||||||||||||||||||||||||||    ||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||   || |    
T  2935382 tgaaaccattgaaacaaacaacgtacattgaaa-ataatactaatagaaataattatgaactcaacaatgaaagaaatcactaggaggcttgttgtacaa 2935284  T
Q  525 cttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacg 624  Q
    ||||||||||||||||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  2935283 cttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgcaataatcacg 2935184  T
Q  625 ccttagagcagccttcaacttatgccaaggattcctacaataagcatt 672  Q
    ||| |||| ||||||||||||||||||||||||| ||||| |||||||    
T  2935183 cctgagagtagccttcaacttatgccaaggattcttacaaaaagcatt 2935136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 420 - 672
Target Start/End: Original strand, 2996663 - 2996914
Alignment:
Q  420 caaaataatgaaaccattgaaacaaacaacgtacattggttgataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttg 519  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  2996663 caaaataatgaaaccattgaaacaaacaacttacattggt-gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttg 2996761  T
Q  520 tactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataa 619  Q
    ||| |||||||||||||||||||||| |||||| | |||||||||||| ||||  |||||||||| |||||||||||  ||||||||||| |||| ||||    
T  2996762 tacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataa 2996861  T
Q  620 tcacgccttagagcagccttcaacttatgccaaggattcctacaataagcatt 672  Q
    |||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  2996862 tcacgcctgagagtagccttcaacttatgccaaggattcctacaaaaagcatt 2996914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 383 - 678
Target Start/End: Complemental strand, 2983698 - 2983397
Alignment:
Q  383 tatttatatgaaattacaatttcgatctaat---acaacaca----aaataatgaaaccattgaaacaaacaacgtacattggttgataatactaatagc 475  Q
    ||||||||||||||||||||||| ||||||    ||||||||    | |||||||||||||||||||||||||||||||| ||| ||||||   |||| |    
T  2983698 tatttatatgaaattacaatttcaatctaagtacacaacacacgaaatataatgaaaccattgaaacaaacaacgtacatgggt-gataatgagaataac 2983600  T
Q  476 aataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaaga 575  Q
    |||||||||||||| ||||||||||||||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2983599 aataattatgaactcaacaatgaaagaaatgactaggatgcttgtactatttgcaagacagaacaaactgtttgaattatagtgagaacaagtagtaaga 2983500  T
Q  576 ttccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaa 675  Q
     |||||||| |||||||||| | | |||||||||||||| |||||||||||| ||||  ||||||||||||| || ||||||  ||||| |||||| |||    
T  2983499 ctccagcaacggaagcagcaattttccaaggagtattgccataatcacgcctgagagtggccttcaacttattcctaggattattacaaaaagcatccaa 2983400  T
Q  676 ttc 678  Q
    |||    
T  2983399 ttc 2983397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 383 - 680
Target Start/End: Complemental strand, 2938271 - 2937989
Alignment:
Q  383 tatttatatgaaattacaatttcgatctaatacaacaca--aaataatgaaaccattgaaacaaacaacgtacattggttgataatactaatagcaataa 480  Q
    ||||||||| |||||||| ||||||||||| ||||||||  |||||||||||| ||||||||||||||||||||||                | ||||||    
T  2938271 tatttatatcaaattacattttcgatctaacacaacacacaaaataatgaaac-attgaaacaaacaacgtacatt----------------aacaataa 2938189  T
Q  481 ttatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattcca 580  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||||||| ||| ||||||||||||    
T  2938188 ttatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaataagtagtaagattcca 2938089  T
Q  581 gcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcattcaattctt 680  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||||| |||| |||||||||||||||||||||||| || ||  ||||||| |||||||    
T  2938088 gcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttatgccaaggattactgcagaaagcatttaattctt 2937989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 2997488 - 2997771
Alignment:
Q  17 agggatcctagtgttaggattactagcatttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaat 116  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||| |    
T  2997488 agggatcatagtgttaggattactagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacatt 2997587  T
Q  117 aaatctaataatatacgaacatataaccaaggtttaaagagaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaaga 216  Q
    |||| |  |  ||||| | |||  |||||| ||| ||||| || ||||||| |   |  |||| | ||| ||| ||| ||||||| ||||||||||||||    
T  2997588 aaatttgttgttataccatcatcgaaccaaagttcaaagacaaacccaccatagtggtatctcaagaaaagttcaattataaaaccggaatcgattaaga 2997687  T
Q  217 ttaacttaacaagttcatcatgagaaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagc 300  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  2997688 ttaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgtttgaaattagataagatagaatctacgtagc 2997771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 2659091 - 2659410
Alignment:
Q  17 agggatcctagtgttaggattactagcatttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaat 116  Q
    ||||||| |||| ||||||  ||||||||||||| ||||  ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  2659091 agggatcgtagtcttaggaacactagcatttgtagaactcgatgaaagtttgtaaatttcttcaataacgaaaaagggaagctgattttcaagtaacaat 2659190  T
Q  117 aaatctaataatatacgaacatataaccaaggtttaaagagaatcc---caccacaagtgactctccaaaaatgttgaataataaaacaggaatcgatta 213  Q
    |||||||||  ||||| | ||| ||||||||||||||| |||| ||   || || ||  |  | |||||||| ||||||| |||||||||||||||||||    
T  2659191 aaatctaatgctataccatcatctaaccaaggtttaaatagaaacccatcatcataatagtatgtccaaaaaagttgaattataaaacaggaatcgatta 2659290  T
Q  214 agattaacttaacaagttcatcatgagaaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtt 313  Q
    ||||||||||||||||||||| || ||||||||| | |||||| |||||||| | |||||||  ||||||| |||| | || || ||||||||||||||     
T  2659291 agattaacttaacaagttcattatcagaaaatggtagggtttcggaataacaacttttgaaacgagataagttagattttatgttgctgaccaaggtgtc 2659390  T
Q  314 taaacttgtgttggttcgtt 333  Q
    ||||| ||  ||||||||||    
T  2659391 taaacatgcattggttcgtt 2659410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 58 - 317
Target Start/End: Complemental strand, 2982818 - 2982559
Alignment:
Q  58 atgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaagag 157  Q
    ||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||| || |||  |||||||| ||   | ||||||||||| ||||||    
T  2982818 atgaacgactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacagtacatcatataatataagactttttaaccaaggttgaaagag 2982719  T
Q  158 aatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttca 257  Q
    |  ||||||| ||     |||||||||| ||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||||||| | || ||||    
T  2982718 agccccaccataatattttctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcattatgagaaaatggtaggggttca 2982619  T
Q  258 gaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaa 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  2982618 gaataacagtgtttgaaatcagataagatagaatctacgtagcagaccaagtcgtttaaa 2982559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 383 - 625
Target Start/End: Complemental strand, 2965364 - 2965111
Alignment:
Q  383 tatttatatgaaattacaatttcgatctaat---acaacacaaaa----taatgaaaccattgaaacaaacaacgtacattggttgataatactaatagc 475  Q
    ||||||||||||||||||||||| ||||||    |||||||| ||    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2965364 tatttatatgaaattacaatttcaatctaaggacacaacacacaaaagataatgaaaccattgaaacaaacaacgtacattggt-gataatactaatagc 2965266  T
Q  476 aataattatgaactaaacaatgaaagaaatcacttggaggc---------ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaa 566  Q
    |||||||||||||| ||||||||||||||||||| ||| ||         ||||||||||||||    |||||||||||||||||||| |||||||||||    
T  2965265 aataattatgaactcaacaatgaaagaaatcactaggaagcattaggttgttgtactacttgca----agaacaaactgtttgaattaaagtgagaacaa 2965170  T
Q  567 gcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgc 625  Q
    | |||||||||||||||| |||||||||||  |||||||||||| |||| |||||||||    
T  2965169 gtagtaagattccagcaaaggaagcagcagcttgccaaggagtactgcagtaatcacgc 2965111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 57 - 318
Target Start/End: Complemental strand, 2934546 - 2934285
Alignment:
Q  57 aatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaaga 156  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||   |  ||||| |  || |||| ||||||||||||    
T  2934546 aatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacattaaatcgtctgttataccagtatctaacaaaggtttaaaga 2934447  T
Q  157 gaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttc 256  Q
    ||  |||  || ||  | ||||||||||| ||||||| ||||||  |||||| ||||| |||||||||||||||||||||||||||||||| | ||||||    
T  2934446 gacgcccttcataatagtctctccaaaaaagttgaattataaaagcggaatctattaaaattaacttaacaagttcatcatgagaaaatggtagggtttc 2934347  T
Q  257 agaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaac 318  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||| ||| |||  ||||||||    
T  2934346 agaataacaacgtttgaaatcagataagatagattctatgtagcagactaagtcgtttaaac 2934285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 500 - 672
Target Start/End: Complemental strand, 2927869 - 2927697
Alignment:
Q  500 agaaatcacttggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgt 599  Q
    |||||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||||||||||| ||||||||||| ||||||||||||||||| |    
T  2927869 agaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagttt 2927770  T
Q  600 gccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcatt 672  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||| |  |||||| |||||||||||||    
T  2927769 gccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgtcgtggattcttacaataagcatt 2927697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 57 - 299
Target Start/End: Complemental strand, 2951889 - 2951647
Alignment:
Q  57 aatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaaga 156  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||   || ||||| |  |  |||||||||||||||||    
T  2951889 aatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtattataccagtacctaaccaaggtttaaaga 2951790  T
Q  157 gaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttc 256  Q
    |   |||  || ||  |  | |||||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  2951789 gctccccttcataacaggatgtccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttc 2951690  T
Q  257 agaataacagcgtttgaaatcagataagatagaatctacgtag 299  Q
    ||||||||| | ||||||||||||||||||||| |||| ||||    
T  2951689 agaataacaacttttgaaatcagataagatagattctatgtag 2951647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 57 - 318
Target Start/End: Complemental strand, 2927107 - 2926846
Alignment:
Q  57 aatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaaga 156  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||   |  ||||| |  || |||||||||||||||||    
T  2927107 aatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtcttataccattatctaaccaaggtttaaaga 2927008  T
Q  157 gaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttc 256  Q
    ||  |||  |  ||  |  | |||||||| ||||||| ||||||  ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||    
T  2927007 gacacccttcgtaataggatgtccaaaaaagttgaattataaaagcggaattgattaagattaacttaacaagttcatcatgagaaaatggtagggtttc 2926908  T
Q  257 agaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaac 318  Q
     |||||||| ||||||||||||||||||||||| |||| ||||| ||| |||  ||||||||    
T  2926907 ggaataacaacgtttgaaatcagataagatagattctatgtagccgactaagtcgtttaaac 2926846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 373 - 565
Target Start/End: Complemental strand, 2954921 - 2954726
Alignment:
Q  373 gcagaacacctatttatatgaaattacaatttcgatctaa-taca----acacaaaataatgaaaccattgaaacaaacaacgtacattggttgataata 467  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||||    |||||||||||||||||||| |||||||||||  |||||||| ||||||||    
T  2954921 gcagaagacctatttatatgaaattacaatatcgatctaagtacacaacacacaaaataatgaaaccatagaaacaaacaagttacattgg-tgataata 2954823  T
Q  468 ctaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaaca 565  Q
    ||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || ||||| ||||    
T  2954822 ctaatagcaataa-tatgaactcaacattgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtgataaca 2954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 57 - 318
Target Start/End: Original strand, 3003906 - 3004173
Alignment:
Q  57 aatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaaga 156  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||   |  ||||| |  || |||||||||||||||||    
T  3003906 aatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtttcttataccattatctaaccaaggtttaaaga 3004005  T
Q  157 gaat---cccac---cacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaa 250  Q
    ||||   || ||   || ||  |  |||||||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||| |     
T  3004006 gaatgcaccgacgatcataatagtatctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtag 3004105  T
Q  251 ggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaac 318  Q
    |||||| |||||||| ||||||||||||||||||| ||| |||| ||||| ||| |||  ||||||||    
T  3004106 ggtttcggaataacaacgtttgaaatcagataagacagattctatgtagcagactaagtcgtttaaac 3004173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 12 - 299
Target Start/End: Complemental strand, 2964492 - 2964193
Alignment:
Q  12 aaaggagggatcctagtgttaggattactagcatttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagta 111  Q
    |||| ||||||  |||||||||||  ||||||||||||| |||| ||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||    
T  2964492 aaagaagggatgttagtgttaggaacactagcatttgtagaactcaatgaaagactgtaaattttttcaataacgaaatagggaagctgattttcaagta 2964393  T
Q  112 acaataaatctaataatatacgaacatataaccaaggtttaaagagaat---------cc---caccacaagtgactctccaaaaatgttgaataataaa 199  Q
    ||| ||||||| ||  ||||| |||||||||||||||| || |||||||         ||   || || ||  |  ||| |||||| ||| ||| |||||    
T  2964392 acattaaatctgatcttataccaacatataaccaaggtatagagagaatattaatgcaccgaacatcataataggatctgcaaaaaagttcaattataaa 2964293  T
Q  200 acaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtag 299  Q
    ||  |||||||||||||||||||| ||||||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||| ||||| ||||    
T  2964292 accagaatcgattaagattaacttgacaagttcatcatgagaaaatggtagagtttcggaataacagcatttgaaatcagataagatagcatctatgtag 2964193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 331 - 508
Target Start/End: Complemental strand, 2952831 - 2952657
Alignment:
Q  331 gttcaacaacaatacaacatgatcaagttgctcgtttgtttagcagaacacctatttatatgaaattacaatttcgatctaatacaacacaaaa----ta 426  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||     ||    
T  2952831 gttcaacaacaatacaacatgatcaagttgcttttttatttagcagaacacccatttatatgaaattacaatttcaatctaatgcaacacaaagagatta 2952732  T
Q  427 atgaaaccattgaaacaaacaacgtacattggttgataatactaatagcaataattatgaactaaacaatgaaagaaatcac 508  Q
    |||||||||||||||||||||||||||||||    |||||| |||||   ||||||||||||| ||||||||||||||||||    
T  2952731 atgaaaccattgaaacaaacaacgtacattg----ataataataata---ataattatgaactcaacaatgaaagaaatcac 2952657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 517 - 672
Target Start/End: Original strand, 3003174 - 3003325
Alignment:
Q  517 ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaa 616  Q
    |||||||||||||||||    |||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  3003174 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaa 3003269  T
Q  617 taatcacgccttagagcagccttcaacttatgccaaggattcctacaataagcatt 672  Q
    ||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||    
T  3003270 taatcacgcctgagagtagccttcaacttatgccatggattcttacaataagcatt 3003325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 2973960 - 2973728
Alignment:
Q  57 aatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaaga 156  Q
    ||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||  |  ||||||||||||||| ||||    
T  2973960 aatgaaatactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatgatatatcattatataaccaaggttttaaga 2973861  T
Q  157 gaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttc 256  Q
    ||   ||  |||||  |  |||| | ||||||| ||| ||||||| |||||| ||||| ||||||||||||||||||  |||||||||||  | |||||     
T  2973860 gatcaccttcacaacaggatctcaataaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcaatatgagaaaatgatagggtttt 2973761  T
Q  257 agaataacagcgtttgaaatcagataagataga 289  Q
     |||||||||| |||||||||||||||||||||    
T  2973760 ggaataacagcctttgaaatcagataagataga 2973728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 331 - 508
Target Start/End: Original strand, 3002964 - 3003141
Alignment:
Q  331 gttcaacaacaatacaacatgatcaagttgctcgtttgtttagcagaacacctatttatatgaaattacaatttcgatctaatacaacacaaa---ataa 427  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||| || |||||||||   ||||    
T  3002964 gttcaacaacaatacaacatgatcaagttgctcttttattcagcagaacacctatttatatgaaattacaatttcaatctgatgcaacacaaaaagataa 3003063  T
Q  428 tgaaac-cattgaaacaaacaacgtacattggttgataatactaatagcaataattatgaactaaacaatgaaagaaatcac 508  Q
    ||||||  |||||||||||| ||||||||| | |||||||| ||||   |||||||||||||| |||||||||||| |||||    
T  3003064 tgaaacatattgaaacaaactacgtacatt-gatgataataataat---aataattatgaacttaacaatgaaagacatcac 3003141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 475 - 632
Target Start/End: Original strand, 2658311 - 2658474
Alignment:
Q  475 caataattatgaactaaacaatgaaagaaatcacttggaggc------ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagc 568  Q
    ||||||||||||||  ||||||||||||||||||| |||| |      |||||||||||| |||||||||||||||||||||||||||||||||| |||     
T  2658311 caataattatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataagt 2658410  T
Q  569 agtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagag 632  Q
    |||||||||||||||| ||||||| |||  | |||||||||| |||||||||||||||| ||||    
T  2658411 agtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagag 2658474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 517 - 664
Target Start/End: Complemental strand, 2952624 - 2952481
Alignment:
Q  517 ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaa 616  Q
    |||||||||||||||||    |||||||||||||| || ||||||| |||| |||| |||||||||||||||||||||||| ||||||||||| |||| |    
T  2952624 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgcca 2952529  T
Q  617 taatcacgccttagagcagccttcaacttatgccaaggattcctacaa 664  Q
    ||||||||||| ||||  || |||||||||| ||||||||| ||||||    
T  2952528 taatcacgcctcagagtggctttcaacttattccaaggattactacaa 2952481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 383 - 483
Target Start/End: Complemental strand, 2986575 - 2986474
Alignment:
Q  383 tatttatatgaaattacaatttcgatctaatacaacacaaaa--taatgaaaccattgaaacaaacaacgtacattggttgataatactaatagcaataa 480  Q
    |||||||||||||||||||||||||||||| | |||||| ||  |||||||||||||||||||||||| |||| |||| |||||||| |||||  |||||    
T  2986575 tatttatatgaaattacaatttcgatctaacaaaacacacaaactaatgaaaccattgaaacaaacaatgtacgttgg-tgataataataataataataa 2986477  T
Q  481 tta 483  Q
    |||    
T  2986476 tta 2986474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 2979855 - 2979775
Alignment:
Q  332 ttcaacaacaatacaacatgatcaagttgctcgtttgtttagcagaacacctatttatatgaaattacaatttcgatctaa 412  Q
    |||||||||||| ||||||||| ||||||||  ||| ||| |||||||||| ||||||||||| |||||||||| ||||||    
T  2979855 ttcaacaacaatgcaacatgataaagttgcttttttatttggcagaacaccaatttatatgaacttacaatttcaatctaa 2979775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 2986472 - 2986421
Alignment:
Q  469 taatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgt 520  Q
    ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  2986472 taataacaataattatgaactcaacaatgaaagaaatcactaggaggcttgt 2986421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 629 - 680
Target Start/End: Complemental strand, 2954721 - 2954670
Alignment:
Q  629 agagcagccttcaacttatgccaaggattcctacaataagcattcaattctt 680  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  2954721 agagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctt 2954670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 362
Target Start/End: Complemental strand, 2965397 - 2965366
Alignment:
Q  331 gttcaacaacaatacaacatgatcaagttgct 362  Q
    ||||||||||||||||||||||||||||||||    
T  2965397 gttcaacaacaatacaacatgatcaagttgct 2965366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 360
Target Start/End: Complemental strand, 2927985 - 2927956
Alignment:
Q  331 gttcaacaacaatacaacatgatcaagttg 360  Q
    ||||||||||||||||||||||||||||||    
T  2927985 gttcaacaacaatacaacatgatcaagttg 2927956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 360
Target Start/End: Complemental strand, 2986608 - 2986579
Alignment:
Q  331 gttcaacaacaatacaacatgatcaagttg 360  Q
    ||||||||||||||||||||||||||||||    
T  2986608 gttcaacaacaatacaacatgatcaagttg 2986579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 388 - 664
Target Start/End: Complemental strand, 3339850 - 3339570
Alignment:
Q  388 atatgaaattacaatttcgatctaatacaacacaaaa---taatgaaaccattgaaacaaacaacgtacattggttgataatactaatagcaataattat 484  Q
    |||| ||||||||||||||||||||| ||||||||||   ||||||||| || |||||||||||||||||||| |  |||||||||| ||||||||||||    
T  3339850 atataaaattacaatttcgatctaatgcaacacaaaaagataatgaaac-atggaaacaaacaacgtacattgata-ataatactaagagcaataattat 3339753  T
Q  485 ga---actaaacaatgaaagaaatcacttggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccag 581  Q
    ||   ||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| || |||||||||||| ||||  |||||||    
T  3339752 gatgaactcaacaaagaaagaaatcactaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtacaattccag 3339653  T
Q  582 caatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattcctacaa 664  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||| |||||    
T  3339652 caatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagagtggccttcaacctatgccaaggattcttacaa 3339570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 82 - 308
Target Start/End: Complemental strand, 3339091 - 3338877
Alignment:
Q  82 taacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaagagaatcccaccacaagtgactctcca 181  Q
    |||||||||| |||||||||||||||||||||||||||||| || |||||| | |    ||||||||||||||||||  |  |||||||               
T  3339091 taacgaaaaagggaagctgattttcaagtaacaataaatctgatgatataccacctaccaaccaaggtttaaagagagacataccacaa----------- 3339003  T
Q  182 aaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttcagaataacagcgtttgaaatcagat 281  Q
     ||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||  | |  ||| |||||||| ||||||||||||| |    
T  3339002 -aaaagttgaattataaaaccggaatcgattaagattaacttaacaagtttatcatcagaaaatgttaggaattccgaataacaacgtttgaaatcaggt 3338904  T
Q  282 aagatagaatctacgtagctgaccaag 308  Q
    |||||||| |||||||||  |||||||    
T  3338903 aagatagactctacgtagaagaccaag 3338877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 424 - 664
Target Start/End: Original strand, 34537 - 34775
Alignment:
Q  424 ataatgaaaccattgaaacaaacaacgtacattggttgataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtact 523  Q
    |||||||||| ||||||||||||| |||| |||| |  |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  34537 ataatgaaac-attgaaacaaacagcgtaaattgata-ataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtact 34634  T
Q  524 acttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcac 623  Q
    |||||||||||||||||||||| |||||  | |||||||||||| ||||| |||||||||| |||||||||||| ||||||||||| |||| ||||||||    
T  34635 acttgcaagacagaacaaactgattgaagcaaagtgagaacaagtagtaaaattccagcaacggaagcagcagtttgccaaggagttttgccataatcac 34734  T
Q  624 gccttagagcagccttcaacttatgccaaggattcctacaa 664  Q
    |||| |||| |||||||||| ||| ||||||||| ||||||    
T  34735 gcctgagagaagccttcaacctattccaaggattactacaa 34775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 43 - 317
Target Start/End: Original strand, 35344 - 35618
Alignment:
Q  43 catttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataa 142  Q
    |||||||| ||||  | ||||||  |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||    
T  35344 catttgtagaactccacgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatcttataccagcatctaa 35443  T
Q  143 ccaaggtttaaagagaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaag---ttcatcatga 239  Q
    ||||||||  | || ||||   |   || |   | |||||||| ||||||| ||||||| |||||||||||||||||||||||||||   |||||| |||    
T  35444 ccaaggttctagga-aatctttcttaaaata--tttccaaaaaagttgaattataaaaccggaatcgattaagattaacttaacaagttcttcatcctga 35540  T
Q  240 gaaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaa 317  Q
    | |||||  | |||||| |||||||| | ||||||||||||||||||||||| || || ||||| |||| || |||||    
T  35541 ggaaatgatagggtttccgaataacaacatttgaaatcagataagatagaatatatgtcgctgatcaagatgcttaaa 35618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 337 - 459
Target Start/End: Original strand, 43551 - 43680
Alignment:
Q  337 caacaatacaacatgatcaagttgctcgtttgtttagcagaacacctat--ttatatgaaattacaatttcgatctaa-taca----acacaaaataatg 429  Q
    |||||||| ||  ||| |||||||||  ||||||| |||||| ||||||  |||||||||||||||||||| |||||| ||||    |||||||||||||    
T  43551 caacaataaaatctgaccaagttgcttttttgtttggcagaagacctatatttatatgaaattacaatttcaatctaattacacaacacacaaaataatg 43650  T
Q  430 aaaccattgaaacaaacaacgtacattggt 459  Q
    ||||||||||||||||||||||||||||||    
T  43651 aaaccattgaaacaaacaacgtacattggt 43680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 34257 - 34300
Alignment:
Q  347 acatgatcaagttgctcgtttgtttagcagaacacctatttata 390  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||    
T  34257 acatgatcaagttgctcttttatttagcagaacacctatttata 34300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 518 - 657
Target Start/End: Complemental strand, 49619102 - 49618963
Alignment:
Q  518 tgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaat 617  Q
    ||||| |||||||||| ||||||||||| ||||| || || ||||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||| ||    
T  49619102 tgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccat 49619003  T
Q  618 aatcacgccttagagcagccttcaacttatgccaaggatt 657  Q
    |||||||||| |||| ||||||||  ||||||||||||||    
T  49619002 aatcacgcctgagagtagccttcagtttatgccaaggatt 49618963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 517 - 656
Target Start/End: Complemental strand, 49614128 - 49613989
Alignment:
Q  517 ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaa 616  Q
    |||||| |||||||| || | |||||||| ||||| || || ||||| ||| ||||| ||||||||||||||||||||||| ||||||||| | ||||||    
T  49614128 ttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgcaa 49614029  T
Q  617 taatcacgccttagagcagccttcaacttatgccaaggat 656  Q
    |||||||| || ||||  ||||||||  ||||||||||||    
T  49614028 taatcacgtctgagagtcgccttcaatctatgccaaggat 49613989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 203 - 320
Target Start/End: Complemental strand, 49618196 - 49618079
Alignment:
Q  203 ggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagctg 302  Q
    |||||| ||||||||||||||||||| ||||||||||| |||| | | |||||  |||||| || | ||||||| ||||||||| ||||||| ||||| |    
T  49618196 ggaatcaattaagattaacttaacaaattcatcatgagtaaattgtagggttttggaataagagtgattgaaatgagataagatggaatctatgtagcag 49618097  T
Q  303 accaaggtgtttaaactt 320  Q
    | ||| ||||| ||||||    
T  49618096 aacaacgtgttcaaactt 49618079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 49618361 - 49618292
Alignment:
Q  57 aatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagt-aacaataaatctaat 125  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||    
T  49618361 aatgaaagaatgtaaatattttcaataacgaaatagggaagctgattttgaagtaaacaataaatctaat 49618292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 498
Target Start/End: Complemental strand, 49619255 - 49619136
Alignment:
Q  377 aacacctatttatatgaaattacaatttcgatctaatacaacacaaa--ataatgaaaccattgaaacaaacaacgtacattggttgataatactaatag 474  Q
    ||||||||||||||| | |||| |||||| ||||||||||||| | |  ||||||||||||||| ||||||||||||| ||||| ||||||   ||||      
T  49619255 aacacctatttatataatattagaatttcaatctaatacaacaaacatgataatgaaaccattggaacaaacaacgtaaattgg-tgataa---taatgt 49619160  T
Q  475 caataattatgaactaaacaatga 498  Q
    ||||||| ||||||| ||||||||    
T  49619159 caataatcatgaactcaacaatga 49619136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 49613380 - 49613312
Alignment:
Q  57 aatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaat 125  Q
    ||||||||||||||||| | || |||||| |||||||| |  ||||||||||||||||| |||||||||    
T  49613380 aatgaaagattgtaaatttcttgaataacaaaaaatggcaattgattttcaagtaacaacaaatctaat 49613312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 383 - 443
Target Start/End: Complemental strand, 49614267 - 49614205
Alignment:
Q  383 tatttatatgaaattacaatttcgatctaatacaaca--caaaataatgaaaccattgaaaca 443  Q
    |||||||||||| || ||||||| ||||| |||||||  ||||||||||||||||||||||||    
T  49614267 tatttatatgaagttgcaatttcaatctagtacaacatgcaaaataatgaaaccattgaaaca 49614205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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