View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11926_low_4 (Length: 533)
Name: NF11926_low_4
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_low_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Complemental strand, 23576650 - 23576145
Alignment:
| Q |
17 |
atttgtaacatgttcggtctaatcttttgaccggatcgtaaagattgtgccaacgcgttgaatgagtgctttagtatattttttagttgatagtgaaatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||| ||| | || ||||| || ||||||||||||||| ||||||||||||||| |
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|
| T |
23576650 |
atttgtaacatgttcggtctaatcttttgaccggatggtaaagactgtgtcaatgtgtcgaatgtctgatttagtatattttttggttgatagtgaaatc |
23576551 |
T |
|
| Q |
117 |
accaaaatcacaatgacaccgtacttttattaagttttaaagtgta--gtttttaacaaaaactacactggttagccgtgattctgtaattctcacaaac |
214 |
Q |
| |
|
||||||||||||||||| || |||||| ||| | ||||||||| | |||||||||||| |||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
23576550 |
gccaaaatcacaatgacattataattttataaagctctaaagtgtatagcttttaacaaaaattacagtggttagccgcgattctgtaattctcataaac |
23576451 |
T |
|
| Q |
215 |
actacaaacaatgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggc |
314 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
23576450 |
attccaaacaatgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccagc |
23576351 |
T |
|
| Q |
315 |
aggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatcca |
414 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23576350 |
aggcttaccggcaagctgttgtgttttccatagtccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatcca |
23576251 |
T |
|
| Q |
415 |
aagacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggtgctctcatcttaccaagcacttcttccgccaata |
514 |
Q |
| |
|
||||||||||| ||||| || | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| | ||||| |
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|
| T |
23576250 |
aagacaaaaccatcaccttcggttagttcattcggggtaatgattggtacatcactcttgggtggtgctctcatcttaccaagtacctcttctggcaata |
23576151 |
T |
|
| Q |
515 |
tctctg |
520 |
Q |
| |
|
| |||| |
|
|
| T |
23576150 |
tttctg |
23576145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 497
Target Start/End: Complemental strand, 23596215 - 23595738
Alignment:
| Q |
17 |
atttgtaacatgttcggtctaatcttttgaccggatcgtaaagattgtgccaacgcgttgaatgagtgctttagtatattttttagttgatagtgaaatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| || | | |||| ||| ||| ||||| ||||||||| |||||||| |||||| |
|
|
| T |
23596215 |
atttgtaacatgttcggtctaatcttttgaccggatggtaaagactg-gttgatgcgtcaaatttgtgatttagcatattttttggttgatagggaaatc |
23596117 |
T |
|
| Q |
117 |
accaaaatcacaatgacaccgtacttttattaagttttaaagtgtagtttttaacaaaaactacactggttagccgtgattctgtaattctcacaaacac |
216 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||| | || ||||||| |||||||||||| ||||| ||| ||| ||||| || ||||||||| |||| |
|
|
| T |
23596116 |
gccaaaatcacaatgacactgtaattttataaagctctagagtgtagcttttaacaaaaataacacttgttcgccatgattttgcaattctcaccaacag |
23596017 |
T |
|
| Q |
217 |
tacaaacaatgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcag |
316 |
Q |
| |
|
| ||| |||| |||| ||||||||||| | ||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
23596016 |
tccaataaatgtacta--agaatatgatccactaaaggctcttccgttgtagtctcttggccatcgccttgggaactgatgctgtagaagattccggcag |
23595919 |
T |
|
| Q |
317 |
gcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaa |
416 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23595918 |
gcttccctgcaagctgttgcgttttccagagaccaccaattgcatctataaaggctttaaactaagcagccatcattccaaatcttgttggaaatccaaa |
23595819 |
T |
|
| Q |
417 |
gacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggtgctctcatcttaccaag |
497 |
Q |
| |
|
|| |||||| ||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23595818 |
gaaaaaaccatcaccttcagttagttcattcggggtaatgattggtacatcactcttgggtggtgctctcatcttaccaag |
23595738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 497
Target Start/End: Complemental strand, 23605137 - 23604660
Alignment:
| Q |
17 |
atttgtaacatgttcggtctaatcttttgaccggatcgtaaagattgtgccaacgcgttgaatgagtgctttagtatattttttagttgatagtgaaatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| || | | |||| ||| ||| ||||| ||||||||| |||||||| |||||| |
|
|
| T |
23605137 |
atttgtaacatgttcggtctaatcttttgaccggatggtaaagactg-gttgatgcgtcaaatttgtgatttagcatattttttggttgatagggaaatc |
23605039 |
T |
|
| Q |
117 |
accaaaatcacaatgacaccgtacttttattaagttttaaagtgtagtttttaacaaaaactacactggttagccgtgattctgtaattctcacaaacac |
216 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||| | || ||||||| |||||||||||| ||||| ||| ||| ||||| || ||||||||| |||| |
|
|
| T |
23605038 |
gccaaaatcacaatgacactgtaattttataaagctctagagtgtagcttttaacaaaaataacacttgttcgccatgattttgcaattctcaccaacag |
23604939 |
T |
|
| Q |
217 |
tacaaacaatgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcag |
316 |
Q |
| |
|
| ||| |||| |||| ||||||||||| | ||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23604938 |
tccaataaatgtacta--agaatatgatccactaaaggctcttccgttgtagtctcttggccatcgccttgggaactgatgctgtagaagattccggcag |
23604841 |
T |
|
| Q |
317 |
gcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaa |
416 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23604840 |
gcttccctgcaagctgttgcgttttccagagaccaccaattgcatctataaaggctttaaactaagcagccatcattccaaatcttgttggaaatccaaa |
23604741 |
T |
|
| Q |
417 |
gacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggtgctctcatcttaccaag |
497 |
Q |
| |
|
|| |||||| ||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23604740 |
gaaaaaaccatcaccttcagttagttcattcggggtaatgattggtacatcactcttgggtggtgctctcatcttaccaag |
23604660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 225 - 520
Target Start/End: Complemental strand, 23590747 - 23590454
Alignment:
| Q |
225 |
atgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccct |
324 |
Q |
| |
|
|||||||| || |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
23590747 |
atgcactaagataataggttcgagtaaaggctcttacgctgtagtctcttgtccaccgccttgggaactagtgttgtagaagattctggcaggcttccct |
23590648 |
T |
|
| Q |
325 |
gcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaagacaaaac |
424 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23590647 |
acaagctgttgtgttttccaaagaccaccagttgcatctagaaaggctttaaattgagcagccatcattccaaatcttgttggaaatccaaagacaaaac |
23590548 |
T |
|
| Q |
425 |
cgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggtgctctcatcttaccaagcacttcttccgccaatatctctg |
520 |
Q |
| |
|
| ||||||||||| || ||||| |||||| | || ||||||||| ||||||||||||||||||||| ||||| ||||| || |||||||| |||| |
|
|
| T |
23590547 |
catcaccctcagaaagctcattgggggtagtaattggtacatca--cttgggtggtgctctcatctttccaagtacttcgtctgccaatatttctg |
23590454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 23564476 - 23564535
Alignment:
| Q |
310 |
ccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaag |
369 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||| | ||||||||| |
|
|
| T |
23564476 |
ccggcaggcttccctgcaagctgtcctgttttccatagacctacagtttcttctagaaag |
23564535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 254 - 500
Target Start/End: Complemental strand, 34339765 - 34339519
Alignment:
| Q |
254 |
gctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccacc |
353 |
Q |
| |
|
|||||||||||||||||||||| || || ||||| |||| |||||||||||||||||||||||||| ||||||||| ||||| |||||| | |||||| |
|
|
| T |
34339765 |
gctcttacgctgtagtctcttgtcctccaccttgagaaccagtgctgtagaagattccggcaggcttgcctgcaagcgattgtgctttccacaaaccacc |
34339666 |
T |
|
| Q |
354 |
agttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaagacaaaaccgtcaccctcagagagttcattcggggta |
453 |
Q |
| |
|
||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||| || || |
|
|
| T |
34339665 |
agtagcatcaagaaaagctttgaattgagcagccatcattccaaatcttgttgggaagccaaagacaaaaccatcaccctcagacagttcatttggtgtg |
34339566 |
T |
|
| Q |
454 |
atgatcggtacatcactcttgggtggtgctctcatcttaccaagcac |
500 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
34339565 |
atgagtggtacatcactcttgggtggtgcactcatctttccaagcac |
34339519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 405
Target Start/End: Original strand, 2649383 - 2649524
Alignment:
| Q |
264 |
tgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatct |
363 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||| ||||| || |||||||| |||||||| | ||||| |||||| | ||||||| ||| |
|
|
| T |
2649383 |
tgtagtttcttggccacctccttgacaagcagtgctgtaaaagatgccagcaggctttcctgcaagtttctgtgtgcaccataggtctccagttgtatcc |
2649482 |
T |
|
| Q |
364 |
agaaaggctttaaactgagcagccatcattccaaatcttgtt |
405 |
Q |
| |
|
| ||| ||||| || |||| |||||||||||||||||||||| |
|
|
| T |
2649483 |
ataaatgctttgaattgagtagccatcattccaaatcttgtt |
2649524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 425
Target Start/End: Original strand, 2645619 - 2645731
Alignment:
| Q |
313 |
gcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatc |
412 |
Q |
| |
|
|||||||| |||||||| |||| | ||||||| || ||||||||||| | ||| |||| || ||||||| |||||||||| |||||| |||||| | |
|
|
| T |
2645619 |
gcaggctttcctgcaagtgtttgtttgttccataaacttccagttgcatcaaaaaatactttgaattgagcagacatcattccatatcttgctggaaaac |
2645718 |
T |
|
| Q |
413 |
caaagacaaaacc |
425 |
Q |
| |
|
|||| | |||||| |
|
|
| T |
2645719 |
caaacaaaaaacc |
2645731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 264 - 404
Target Start/End: Complemental strand, 36461849 - 36461709
Alignment:
| Q |
264 |
tgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatct |
363 |
Q |
| |
|
|||||||||||| || || || || |||| |||||||| |||||||| |||||||| |||||||| || || |||||| |||||||||||||| |
|
|
| T |
36461849 |
tgtagtctcttgtcctcctccctgagaaccagtgctgtaaaagattcctgcaggctttcctgcaagtgcctgagtacgccataggccaccagttgcatcc |
36461750 |
T |
|
| Q |
364 |
agaaaggctttaaactgagcagccatcattccaaatcttgt |
404 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36461749 |
aagaatgctttaaactgagcagccatcattccaaatcttgt |
36461709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 403
Target Start/End: Complemental strand, 36455400 - 36455339
Alignment:
| Q |
342 |
ccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttg |
403 |
Q |
| |
|
|||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
36455400 |
ccataggccaccagttgcatccaagaatgctttaaactgagcagccatcattccaaatcttg |
36455339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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