View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11926_low_6 (Length: 459)

Name: NF11926_low_6
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11926_low_6
NF11926_low_6
[»] chr3 (27 HSPs)
chr3 (12-250)||(23401567-23401806)
chr3 (61-274)||(23469075-23469289)
chr3 (271-443)||(23469314-23469486)
chr3 (61-274)||(23454609-23454823)
chr3 (61-274)||(23352491-23352705)
chr3 (61-274)||(23479133-23479347)
chr3 (330-443)||(23401804-23401917)
chr3 (61-274)||(23440465-23440679)
chr3 (61-274)||(23447844-23448058)
chr3 (61-274)||(23472994-23473208)
chr3 (61-274)||(23499612-23499826)
chr3 (66-274)||(23463836-23464045)
chr3 (61-274)||(23405200-23405414)
chr3 (67-274)||(23386832-23387040)
chr3 (60-241)||(23398488-23398670)
chr3 (279-367)||(23440711-23440799)
chr3 (64-274)||(35768708-35768919)
chr3 (279-365)||(23448090-23448176)
chr3 (279-365)||(23473240-23473326)
chr3 (279-431)||(23387072-23387222)
chr3 (279-431)||(23499858-23500008)
chr3 (277-364)||(23352735-23352822)
chr3 (279-431)||(23479379-23479529)
chr3 (279-364)||(23454855-23454940)
chr3 (279-364)||(23405446-23405531)
chr3 (61-180)||(36003087-36003206)
chr3 (279-361)||(23464077-23464159)
[»] scaffold0201 (2 HSPs)
scaffold0201 (61-275)||(11995-12210)
scaffold0201 (277-434)||(12239-12394)
[»] chr4 (1 HSPs)
chr4 (69-210)||(12896270-12896412)
[»] chr2 (2 HSPs)
chr2 (69-172)||(16122319-16122422)
chr2 (69-172)||(16336778-16336881)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 23401567 - 23401806
Alignment:
Q  12 gagatgaacagccatcaagtaagagtttccagagagattttgaatgaaattttggagctttttcaattcattttcgcatgcttccttgcttcttgaactc 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||    
T  23401567 gagatgaacagccatcaagtaagagtttccagagggattttgaatgaaattttggagctttttcaattcatttttgcatgcttcctagctccttgaactc 23401666  T
Q  112 ggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattacactttctgatagatc-tcatatccagttttaggatgtttttctc 210  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23401667 ggattttcacctaaaacttttatagccagatgattgcctttgcaataggcaattacactttctgatagatcttcatatccagttttaggatgtttttctc 23401766  T
Q  211 agaagacagtcaaactcaatagatgaagagaatcatgttt 250  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  23401767 agaagatagtcaaactcaatagatgaagagaatcatgttt 23401806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 61 - 274
Target Start/End: Original strand, 23469075 - 23469289
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  23469075 ttttggagcattttcaattcattgtcccatgcttccttgcttcttgaactcggatttgcacctaaaacttttatagccagaggattgcctttgcaatagg 23469174  T
Q  161 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 259  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||    
T  23469175 caattacactctctgatagatcttcatatccaattttaggatgtttttctccgaagatagtcaaactcaatagttgaagagaatcatgtttgttcaattc 23469274  T
Q  260 cttaacctcatatat 274  Q
    |||||||||| ||||    
T  23469275 cttaacctcacatat 23469289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 443
Target Start/End: Original strand, 23469314 - 23469486
Alignment:
Q  271 atatgagtttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctaca 370  Q
    ||||| |||||| ||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  23469314 atatgtgtttatatctagttgtaataatgaccccactacccggtgccagtccatcaatttttagcataagatcttctatttgctctacagtttctctaca 23469413  T
Q  371 ctatccagcacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttctacgtgcaataatt 443  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  23469414 ctatccagcacaatgtaaaattctttacgtgcaatccttctcacagagaaaggggtttctacgtgcaataatt 23469486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 61 - 274
Target Start/End: Original strand, 23454609 - 23454823
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    |||||||||||||||||||||||||| ||| | || |||| |||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  23454609 ttttggagctttttcaattcattttcccattcatctttgcctcttgaactcagattagcacctaaaacttttaaagccagaggattgcctttgcaatagg 23454708  T
Q  161 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 259  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||   ||||||||||||||| ||||| |||| ||||||||| || ||||| ||    
T  23454709 caattacactctctgatagatcttcatatccaattttaggatgtttttccttgaagacagtcaaactgaatagctgaaaagaatcatgattattcaattc 23454808  T
Q  260 cttaacctcatatat 274  Q
    ||||||||| |||||    
T  23454809 cttaacctcgtatat 23454823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 61 - 274
Target Start/End: Original strand, 23352491 - 23352705
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    ||||| |||||||||||||||||||  ||| |||  || | |||||||||| |||| |||||||||||||||| ||||||  ||||||||| ||||||||    
T  23352491 ttttgtagctttttcaattcatttttccattcttttttccctcttgaactcagattagcacctaaaacttttaaagccagcggattgccttggcaatagg 23352590  T
Q  161 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 259  Q
    ||||||||| |||||||||||| ||||||||| | |||||||| ||||||| |||| ||| |||||  ||||| |||||||||||| |||||||||| ||    
T  23352591 caattacacgttctgatagatcttcatatccaatattaggatgcttttctctgaaggcagacaaacagaatagctgaagagaatcacgtttgttcaattc 23352690  T
Q  260 cttaacctcatatat 274  Q
    |||||||||||||||    
T  23352691 cttaacctcatatat 23352705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 61 - 274
Target Start/End: Original strand, 23479133 - 23479347
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    |||||||||||||||||||||||||| || ||||| | ||  ||||||||  |||| ||||||||||||||||  |||||| | || |||||||||||||    
T  23479133 ttttggagctttttcaattcattttcccacgcttcttggccccttgaactgagatttgcacctaaaacttttaatgccagagggttacctttgcaatagg 23479232  T
Q  161 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 259  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||  |||| |||||||||| ||||| |||| ||||||||| |||||||| ||    
T  23479233 caattacactttctgatagatcttcatatccaattttaggttgtttttctttgaaggcagtcaaactgaatagctgaaaagaatcatgcttgttcaattc 23479332  T
Q  260 cttaacctcatatat 274  Q
     |||| |||||||||    
T  23479333 tttaagctcatatat 23479347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 330 - 443
Target Start/End: Original strand, 23401804 - 23401917
Alignment:
Q  330 tttagcataagatcttctatttgttctaaggtttctctacactatccagcacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttc 429  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23401804 tttagcataagatcttttatttgctctaaggtttctctacactatccagcacaatgaaagattctttacgtgcaatccttctcacagacaaaggggtttc 23401903  T
Q  430 tacgtgcaataatt 443  Q
    ||||||||||||||    
T  23401904 tacgtgcaataatt 23401917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 61 - 274
Target Start/End: Original strand, 23440465 - 23440679
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    |||| ||||||||||||||||||||| ||||| || |||| |||||| |   ||||  | ||||||||||||| ||||||| ||||||||||||||||||    
T  23440465 ttttcgagctttttcaattcattttcccatgcctctttgcctcttgagcggagattttcccctaaaacttttaaagccagaggattgcctttgcaatagg 23440564  T
Q  161 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 259  Q
    |||||||||||||||||||||| ||| ||||| ||||||  |||||||||| |||| || ||||||| | ||| |||||||||||||| |||||||| ||    
T  23440565 caattacactttctgatagatcttcacatccaattttagactgtttttctccgaaggcattcaaactgagtagctgaagagaatcatggttgttcaattc 23440664  T
Q  260 cttaacctcatatat 274  Q
    ||| |||||||||||    
T  23440665 cttgacctcatatat 23440679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 61 - 274
Target Start/End: Original strand, 23447844 - 23448058
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    |||||||||||||||| ||||||||| ||||||||   ||  ||||||||  |||| |||||||||||||||| ||||||| | || |||||||||||||    
T  23447844 ttttggagctttttcagttcattttcccatgcttctcggccccttgaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaatagg 23447943  T
Q  161 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 259  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||  |||| || ||||||| ||||| |||||||||||| | || |  || ||    
T  23447944 caattacactatctgatagatcttcatatccagttttaggatgtttttctttgaaggcaatcaaactgaatagctgaagagaatcaggcttctctaattc 23448043  T
Q  260 cttaacctcatatat 274  Q
    |||||||||||||||    
T  23448044 cttaacctcatatat 23448058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 61 - 274
Target Start/End: Original strand, 23472994 - 23473208
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    |||| ||||||||||||||||||||| ||||| || |||| |||||| |   ||||  | ||||||||||||| ||||||| ||||||||||||||||||    
T  23472994 ttttcgagctttttcaattcattttcccatgcctctttgcctcttgagcggagatttacccctaaaacttttaaagccagaggattgcctttgcaatagg 23473093  T
Q  161 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 259  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||| ||| |||| || ||||||| ||||| |||||||||||||| |||||||| |     
T  23473094 caattacactttctgatagatcttcatatccaattttaggctgttttcctccgaaggcattcaaactgaatagctgaagagaatcatgattgttcaatta 23473193  T
Q  260 cttaacctcatatat 274  Q
    | | |||||||||||    
T  23473194 catgacctcatatat 23473208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 61 - 274
Target Start/End: Original strand, 23499612 - 23499826
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    |||||||||||||||| ||||||||| ||||||||   ||  ||||||||  |||| |||||||||||||||| ||||||| | || |||||||||||||    
T  23499612 ttttggagctttttcagttcattttcccatgcttctcggccccttgaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaatagg 23499711  T
Q  161 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 259  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||||||||  |||| |||||||||| ||||| |||||||||||| | || |  || ||    
T  23499712 caattacactatctgatacatcttcatatccagttttaggatgtttttctttgaaggcagtcaaactgaatagctgaagagaatcaggcttctctaattc 23499811  T
Q  260 cttaacctcatatat 274  Q
    |||||||||||||||    
T  23499812 cttaacctcatatat 23499826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 23463836 - 23464045
Alignment:
Q  66 gagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaatt 165  Q
    ||||||||||||||||| ||| ||| |||  |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| ||||||||||||||    
T  23463836 gagctttttcaattcatcttcccatacttttttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaatt 23463935  T
Q  166 acactttctgatagatct-catatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatccttaa 264  Q
    |||||||| ||||||||| |||||||| ||||||| |||||||||| |||| ||  |||||| ||||| ||||||||||||||||||||||| || ||||    
T  23463936 acactttccgatagatcttcatatccaattttaggctgtttttctccgaaggcaaacaaactgaatagttgaagagaatcatgtttgttcaattcattaa 23464035  T
Q  265 cctcatatat 274  Q
     |||||||||    
T  23464036 actcatatat 23464045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 61 - 274
Target Start/End: Original strand, 23405200 - 23405414
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    |||| ||||||||||||||||| ||| ||| ||   |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| |||||||||    
T  23405200 ttttcgagctttttcaattcatcttcccatactattttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaatagg 23405299  T
Q  161 caattacactttctgatagatct-catatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 259  Q
    ||||||||||||| ||||||||| |||||||| ||||||| |||||||||| |||| ||  |||||| ||||| ||||||||||||||||||||||| ||    
T  23405300 caattacactttcagatagatcttcatatccaattttaggctgtttttctccgaaggcaaacaaactgaatagttgaagagaatcatgtttgttcaattc 23405399  T
Q  260 cttaacctcatatat 274  Q
     |||| |||||||||    
T  23405400 attaaactcatatat 23405414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 67 - 274
Target Start/End: Original strand, 23386832 - 23387040
Alignment:
Q  67 agctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaatta 166  Q
    |||||||||||||||| ||| ||| |||  |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| |||||||||||||||    
T  23386832 agctttttcaattcatcttcccatacttttttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaatta 23386931  T
Q  167 cactttctgatagatct-catatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatccttaac 265  Q
    |||||||||||| |||| |||||||| ||||||| |||||||||| |||| || ||||||| ||||  |||||||||||||| |||||||| ||||| ||    
T  23386932 cactttctgatatatcttcatatccaattttaggctgtttttctccgaaggcattcaaactgaataactgaagagaatcatggttgttcaattccttgac 23387031  T
Q  266 ctcatatat 274  Q
     ||||||||    
T  23387032 ttcatatat 23387040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 241
Target Start/End: Original strand, 23398488 - 23398670
Alignment:
Q  60 attttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatag 159  Q
    |||||||||||||| |||||| ||||| |||| ||| ||||  |||||||| ||||| ||| |||||||||||| ||||||| | || | ||| ||||||    
T  23398488 attttggagcttttccaattctttttcccatgtttctttgccccttgaacttggatttgcagctaaaacttttaaagccagagggtttcatttacaatag 23398587  T
Q  160 gcaattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagaga 241  Q
    ||||||| ||||| ||||||||| | ||||||| |||||||||||||||||| ||||  ||  ||||| ||||| ||||||||    
T  23398588 gcaattagactttgtgatagatctttatatccaattttaggatgtttttctctgaaggaaggaaaactgaatagctgaagaga 23398670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 279 - 367
Target Start/End: Original strand, 23440711 - 23440799
Alignment:
Q  279 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctct 367  Q
    |||||||| ||||| |||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  23440711 ttatctctagttgtcataatgaccctactacccggtcccagcccatcaatttttaggataagatcttctatttgctctaaggtttctct 23440799  T

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Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 274
Target Start/End: Complemental strand, 35768919 - 35768708
Alignment:
Q  64 tggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaa 163  Q
    ||||| |||| |||||||||||  |||||||| || ||||||||||   ||   ||||| |||||||||| ||||| | |||||||||||||||||||||    
T  35768919 tggagtttttccaattcatttttccatgcttctttacttcttgaacgaagacgtgcacccaaaacttttaaagccaaaggattgcctttgcaataggcaa 35768820  T
Q  164 ttacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatcctt 262  Q
    | ||||||||||| || || ||||||||| |||||||||| ||||||  ||| ||||||||||  || || |||||||| |  || || ||||| |||||    
T  35768819 taacactttctgagagctcttcatatccacttttaggatgcttttctttgaatacagtcaaacagaaaagctgaagagagttgtgcttattcaattcctt 35768720  T
Q  263 aacctcatatat 274  Q
     ||||| |||||    
T  35768719 gacctcgtatat 35768708  T

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Target: chr3; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 23448090 - 23448176
Alignment:
Q  279 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttct 365  Q
    |||||||| |||||||||||||||||||||||  || | || |||||||||||||| ||||||||||||||||||||||||||||||    
T  23448090 ttatctctagttgtaataatgaccctactacctggtcctagaccatcaatttttaggataagatcttctatttgttctaaggtttct 23448176  T

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Target: chr3; HSP #19
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 23473240 - 23473326
Alignment:
Q  279 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttct 365  Q
    |||||||| ||||| |||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  23473240 ttatctctagttgtcataatgaccctactacccggtcccagcccatcaatttttaggataagatcttctatttgctctaaggtttct 23473326  T

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Target: chr3; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 431
Target Start/End: Original strand, 23387072 - 23387222
Alignment:
Q  279 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctacactatccag 378  Q
    |||||||| |||||||||||||||||||||||   | |||  |||||||| ||||| ||||||||||||||||  |||||||| ||   ||||||||||     
T  23387072 ttatctctagttgtaataatgaccctactacctgctcccaacccatcaatatttaggataagatcttctattttctctaaggtgtcc--acactatccaa 23387169  T
Q  379 cacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttcta 431  Q
    ||||||||||  || |||||||||||| |||||||| || ||||||| |||||    
T  23387170 cacaatgaaaacttttttacgtgcaatccttctcacggagaaaggggattcta 23387222  T

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Target: chr3; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 431
Target Start/End: Original strand, 23499858 - 23500008
Alignment:
Q  279 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctacactatccag 378  Q
    |||||||| |||||||||||||||||||||||  || |||| |||||||||||| | ||||||||||||||||| |||||||||  ||||||| |||||     
T  23499858 ttatctctagttgtaataatgaccctactacctggtcccagaccatcaatttttgggataagatcttctatttgctctaaggtt--tctacaccatccaa 23499955  T
Q  379 cacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttcta 431  Q
    |||||| |||  || ||||||  |||| |||||| | || ||||||| |||||    
T  23499956 cacaattaaaacttttttacgaccaatccttctctcggagaaaggggcttcta 23500008  T

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Target: chr3; HSP #22
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 23352735 - 23352822
Alignment:
Q  277 gtttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttc 364  Q
    |||||||||| |||||||||||||||||||||||| || |||   ||||||||||||| ||||||||||||||||| |||||||||||    
T  23352735 gtttatctctagttgtaataatgaccctactacccggtcccaacgcatcaatttttaggataagatcttctatttgctctaaggtttc 23352822  T

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Target: chr3; HSP #23
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 279 - 431
Target Start/End: Original strand, 23479379 - 23479529
Alignment:
Q  279 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctacactatccag 378  Q
    |||||||| |||||||||||||||||||||||  || |||| |||||||||||| | |||||||| |||||||| |||||||||  ||||||| |||||     
T  23479379 ttatctctagttgtaataatgaccctactacctggtcccagaccatcaatttttgggataagatcatctatttgctctaaggtt--tctacaccatccaa 23479476  T
Q  379 cacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttcta 431  Q
    |||||| |||  || ||||||  |||| |||||| | || ||||||| |||||    
T  23479477 cacaattaaaacttttttacgcccaatccttctctcggagaaaggggcttcta 23479529  T

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Target: chr3; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 23454855 - 23454940
Alignment:
Q  279 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttc 364  Q
    |||||||| |||||||||||||||||||||||  || |||| |||||||||||||| |||| ||||||||||   |||||||||||    
T  23454855 ttatctctagttgtaataatgaccctactaccgggtcccagcccatcaatttttaggataaaatcttctattctctctaaggtttc 23454940  T

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Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 23405446 - 23405531
Alignment:
Q  279 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttc 364  Q
    |||||||| |||||||| ||||||||||||||| || |||  ||||||||| || | ||||||||||||||||  |||||||||||    
T  23405446 ttatctctagttgtaatgatgaccctactacccggtcccaccccatcaattatttggataagatcttctattttctctaaggtttc 23405531  T

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Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 36003087 - 36003206
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    |||| |||||||| ||||||| |||| |||||||| |||||| ||| ||    ||| |||||||||||||||| ||||||  ||||||||  |||||||     
T  36003087 tttttgagcttttccaattcactttcccatgcttctttgctttttgtacggaaatttgcacctaaaacttttaaagccaggggattgcctccgcaatagc 36003186  T
Q  161 caattacactttctgataga 180  Q
    ||||| | |||| |||||||    
T  36003187 caattgctctttttgataga 36003206  T

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Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 361
Target Start/End: Original strand, 23464077 - 23464159
Alignment:
Q  279 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggt 361  Q
    |||||||| ||||||||||||||||||||||||| | |||  |||| |||| |||| |||||||| |||| ||  ||||||||    
T  23464077 ttatctctagttgtaataatgaccctactacccaatcccaacccataaattattaggataagatcatctaattaatctaaggt 23464159  T

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Target: scaffold0201 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 61 - 275
Target Start/End: Original strand, 11995 - 12210
Alignment:
Q  61 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 160  Q
    |||| ||||||||||||||||||||| ||||| || |||| ||||||||   |||| || |||| |||||||| ||| ||| ||||||||||||||||||    
T  11995 tttttgagctttttcaattcattttcccatgcctctttgcctcttgaacggagatttgcccctataacttttaaagctagaggattgcctttgcaatagg 12094  T
Q  161 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 259  Q
     ||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||| || ||||||| ||||  |||||||||||||| |||||||| ||    
T  12095 aaattacactttctgatagatcttcatatccaattttaggctgtttttctccgaaggcattcaaactgaataactgaagagaatcatggttgttcaattc 12194  T
Q  260 cttaacctcatatatg 275  Q
    ||| || |||||||||    
T  12195 cttgacttcatatatg 12210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 277 - 434
Target Start/End: Original strand, 12239 - 12394
Alignment:
Q  277 gtttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctacactatcc 376  Q
    |||||||||| |||||||||||||||||||||||| || |||| || ||||||||||| ||||||||| ||||||| | || ||||  || || | ||||    
T  12239 gtttatctctagttgtaataatgaccctactacccggtcccagcccttcaatttttaggataagatctgctatttgatgtatggtt--tccacgccatcc 12336  T
Q  377 agcacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttctacgt 434  Q
    | ||||||||||  ||  ||||||||||| |||||||  || |||| || ||||||||    
T  12337 aacacaatgaaaactttcttacgtgcaatccttctcatggagaaagaggattctacgt 12394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 12896412 - 12896270
Alignment:
Q  69 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 168  Q
    ||||| ||||||| || | |||||||| |||||| ||| ||    ||| |||||||||||||| | ||||||  |||||||| | |||||| ||||| ||    
T  12896412 cttttccaattcacttgcccatgcttctttgctttttgtacgaaaatttgcacctaaaactttcaaagccaggggattgcctctacaatagccaattgca 12896313  T
Q  169 ctttctgatagat-ctcatatccagttttaggatgtttttctc 210  Q
    || | |||||||| ||||||||||  |||||||||||||||||    
T  12896312 ctctttgatagatcctcatatccatctttaggatgtttttctc 12896270  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 16122319 - 16122422
Alignment:
Q  69 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 168  Q
    ||||| ||||||| |||| |||||||| |||||| ||| ||   ||||||||||||||||||| | ||| ||| |||||||| |||||||  ||||| ||    
T  16122319 cttttccaattcactttcccatgcttctttgctttttgcacaaagattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgca 16122418  T
Q  169 cttt 172  Q
    ||||    
T  16122419 cttt 16122422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 16336881 - 16336778
Alignment:
Q  69 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 168  Q
    ||||| ||||||| |||| |||||||| |||||| ||| ||    |||||||||||||||||| | ||| ||| |||||||| |||||||  ||||| ||    
T  16336881 cttttccaattcactttcacatgcttctttgctttttgcacgaaaattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgca 16336782  T
Q  169 cttt 172  Q
    ||||    
T  16336781 cttt 16336778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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