View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11926_low_9 (Length: 394)
Name: NF11926_low_9
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 26846295 - 26846663
Alignment:
| Q |
18 |
gttttatcttaaaaacaagttgcagcatcaaagttttgatgtatgtgtaactgcaacacaactgcagttgaggcagtatcagccttctttgactgatttt |
117 |
Q |
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| T |
26846295 |
gttttatcttaaaaacaagttgcagcatcaaagttttgatgtatgtgtaactgcaacacaactgcagttgaggcagtatcagccttctttgactgatttt |
26846394 |
T |
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| Q |
118 |
caacaatatcaatatcacacgagcacgatttaaaacttgtttatcaataaaataggatgaagatcatagcctatatgatccaaaaatatggtcatatttg |
217 |
Q |
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| T |
26846395 |
caacaatatcaatatcacacgagcacgatttaaaacttgtttatcaataaaataggatgaagatcatagcttatatgatccaaaaatatggtcatatttg |
26846494 |
T |
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| Q |
218 |
tttaatgtttaaaataaaagaccgagcaatataggaaataacatttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactt |
317 |
Q |
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| T |
26846495 |
tttaatgtttaaaataaaagactgagcaatataggaaataacatttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactt |
26846594 |
T |
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| Q |
318 |
tgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacacagcaggtttcttctc |
386 |
Q |
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| T |
26846595 |
tgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacacaacaggtttcttctc |
26846663 |
T |
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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 54881118 - 54881202
Alignment:
| Q |
261 |
tttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg |
345 |
Q |
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| T |
54881118 |
tttttgttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg |
54881202 |
T |
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