View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11927_high_16 (Length: 252)
Name: NF11927_high_16
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_high_16 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 939540 - 939297
Alignment:
| Q |
11 |
cacagacacctagatcctctgtttgagtccccagtcaaataaaatatcaaccatcggatataaaagtataacatgaatctaaccgtcaaaatttgagagg |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
939540 |
cacacacacctagatcctctgtttgagtccccagtcaaataaaatctcaaccatcggatataaaagtataacataaatctaaccgtcaaaatttgagtgg |
939441 |
T |
|
| Q |
111 |
aatgcactggactctagacacccacatgtgcaaatgaaaatacgaaaccaaaccaatat--atatgtctgaaagtgaaaccaaaccaaacaaacgattta |
208 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
939440 |
aacgcactggactctagacacccacatgtgcaaatgaaaatacgaaaccaaaccaatatatatatgtctgaaagtgaaaccaaaccaaacaaacgattta |
939341 |
T |
|
| Q |
209 |
aactctaataatggccttatcttctacttcactcatttcacctc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
939340 |
aactctaataatggccttatcttctacttcactcatttcacctc |
939297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University