View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_high_19 (Length: 244)
Name: NF11927_high_19
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_high_19 |
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| [»] scaffold0015 (3 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 11022 - 10810
Alignment:
| Q |
13 |
aagaagatagattaagaggtggagataccaaaatggtctccatagaatctagtaaatagtcacccattgaagcaaaaacagatatcacatcattgaaata |
112 |
Q |
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| T |
11022 |
aagaagatagattaagaggtggagataccaaaatggtctccatagaatctagtaaatagtcacccattgaagcaaaaacagatatcacatcattgaaata |
10923 |
T |
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| Q |
113 |
ttgaattctcacagttacatgtataccagatgaaagattaaccttagtgttatccaacgatgcttgtacaatagacgcgatgctatttatgttgatccca |
212 |
Q |
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| T |
10922 |
ttgaattctcacagttacatgtataccagatgaaagattaaccttagtgttatccaacgatgcttgtacaatagacgcgatgctatttatgttgattcca |
10823 |
T |
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| Q |
213 |
acatggttgtgag |
225 |
Q |
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| T |
10822 |
acatggttgtgag |
10810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 19720 - 19930
Alignment:
| Q |
13 |
aagaagatagattaagaggtggagataccaaaatggtctccatagaatctagtaaatagtcacccattgaagcaaaa-acagatatcacatcattgaaat |
111 |
Q |
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| T |
19720 |
aagaagagagattaagaggtggagataccaaaagggtctccataaaatcatttgagtttttactcattgaaccaaaaaacagatattatatcattggaat |
19819 |
T |
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| Q |
112 |
attgaattctcacagttacatgtataccagatgaaagattaaccttagtgttatccaacgatgcttgt-acaatagacgcgatgctatttatgttgatcc |
210 |
Q |
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| T |
19820 |
attgaattctcacagttacatctaaaccagatgaaatattgattttagtgttctccaatgatgcttgtgtcaat-gaagagatgctatttatgttgattc |
19918 |
T |
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| Q |
211 |
caacatggttgt |
222 |
Q |
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| T |
19919 |
caacatggttgt |
19930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 36688 - 36537
Alignment:
| Q |
25 |
taagaggtggagataccaaaatggtctccatagaatctagtaaatagtcacccattgaagcaaaaacagatatcacatcattgaaatattgaattctcac |
124 |
Q |
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||||||||||||||||||||| ||| ||||||||||| | ||| || ||||||| ||||||||||||| | ||||||| ||||||||||||||| |
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| T |
36688 |
taagaggtggagataccaaaagggtttccatagaatcatttgaatt---actcattgaaccaaaaacagatattatatcattggaatattgaattctcat |
36592 |
T |
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| Q |
125 |
agttacatgtataccagatgaaagattaaccttagtgttatccaacgatgcttgt |
179 |
Q |
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| T |
36591 |
agttacatctaaaccagatgaaagattgaccttagtgttttccaatgatgcttgt |
36537 |
T |
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