View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_high_6 (Length: 487)
Name: NF11927_high_6
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 39641247 - 39640846
Alignment:
| Q |
15 |
tttatcttgttcacaaaccagaaaccgttctcttgttgtacactgtttttaccaactctagacgacttgagcaacggcggctctagtctagtaagcaagt |
114 |
Q |
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| T |
39641247 |
tttatcttgtacacaaaccctcatcctttctcttatgttacactgtttttaccaactctagacgacttgagcaacggcggctctagtctagtaagcaagt |
39641148 |
T |
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| Q |
115 |
agttctcatcagcaagtagttcaaagtttggatattgatttttgtgcatgtaaaatgcctagttgagaggagaaaaccactataattccctgagattctt |
214 |
Q |
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| T |
39641147 |
agtt-----------------caaagtttggatattgatttttgtgcatgtaaaatgcctagttgagaggagaaaaccactataatgccctgagattctt |
39641065 |
T |
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| Q |
215 |
tgaaaacagtctctattgacaatgcaaaatactacactccttatgcaactcatgggccnnnnnnncattacacgtgatttgtgttaagtgatctaccacg |
314 |
Q |
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| T |
39641064 |
tgaaaacagtctctattgacaatgcaaaatactacactccttatgcaactcatgggccaaaaaaacattacacgtgatttgtgttaagtgatctaccacg |
39640965 |
T |
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| Q |
315 |
tttacggactattatgatcaatctcctattttggtgttaaccctttgannnnnnnaggagaaataccattgacaaatctagagttcgctcaggaaataag |
414 |
Q |
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| T |
39640964 |
tttacggactattatgatcaatctccaattttggtgttaaccctttga-ttttttaggagaaataccattgacaaatcttgagttcactcaggaaataag |
39640866 |
T |
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| Q |
415 |
aaaaatttgatcaaatatta |
434 |
Q |
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| T |
39640865 |
aaaaatttgatcaaatatta |
39640846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 432 - 485
Target Start/End: Complemental strand, 39640758 - 39640705
Alignment:
| Q |
432 |
ttagcaactaacccctacctagcggcatttggaccttaacgggatcggcctatg |
485 |
Q |
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| T |
39640758 |
ttagcaactaacccctacctagcggcatttggaccttaacggaatcggcctatg |
39640705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 39681227 - 39681291
Alignment:
| Q |
282 |
ttacacgtgatttgtgttaagtgatctaccacgtttacggactattatgatcaatctcctatttt |
346 |
Q |
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| T |
39681227 |
ttacacatgatttgtgttaactgatttaccacgtttgtggactattttgatcaaacttctatttt |
39681291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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