View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_high_7 (Length: 485)
Name: NF11927_high_7
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 55963254 - 55963712
Alignment:
| Q |
19 |
aggtatggtttgtatgcactaactgttagtacaggtgcaatttacactattttggtgcctatatttgagcttctcaagaatccaattactgcaattctca |
118 |
Q |
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| T |
55963254 |
aggtatggtttgtatgcactaactgttagtacaggtgcaatttacactattttggtgcctatatttgagcttctcaagaatccaattactgcaattctca |
55963353 |
T |
|
| Q |
119 |
tcattgctattcttggaggtggtttctacattgtttctcaagtccttattgctatggttggcgtttctgattttagttatgattatgcaaactagatagt |
218 |
Q |
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| T |
55963354 |
tcattgctattcttggaggtggtttctacattgtttctcaagtccttactgctatggttggcgtttctgattttagttatgattatgcaaactagatagt |
55963453 |
T |
|
| Q |
219 |
ttatttgtcaaagcaatgtttttgaatccatagttttatttaatttgtaccatagtaaactcagttaaaagtcctccattgaatggaatgagatattaca |
318 |
Q |
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| T |
55963454 |
ttatttgtcaaagcaatgtttttgaatccatagttttatttaatttgtaccatagtaaactcggttaaaagtcctccattgaatggaatgagatattaca |
55963553 |
T |
|
| Q |
319 |
attgcctgaaattatgtttataagttgagttagatacaagtacaactcaaattttaaaattaaattgatctaatagtatttggataagatggttg--ttt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |
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| T |
55963554 |
attgcctgaaattatgtttataagttgagttagatacaagtacaactcaaattttaaaagtaaattgatctaataatatttggataagatggttgttttt |
55963653 |
T |
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| Q |
417 |
tagtgaatatttggtatcgcgatgggcggaggctcaacataattataatataccctatg |
475 |
Q |
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| T |
55963654 |
tagtgaatatttggtatcgcgatgggcggaggctcaacataattatactataccctatg |
55963712 |
T |
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