View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_low_1 (Length: 933)
Name: NF11927_low_1
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 596 - 842
Target Start/End: Complemental strand, 36957648 - 36957392
Alignment:
| Q |
596 |
atatactcctaatcttacagtatgctaaatgaaatgatacacaacccaactctcnnnnnnnnn----------ggtttgttttttaaacaggtattagaa |
685 |
Q |
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| T |
36957648 |
atatactcctaatcttacagtatgctaaaagaaatgatacacaacccaactctcaaaaaaaaaaaaaaatataggtttgttttttaaacaggtattagaa |
36957549 |
T |
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| Q |
686 |
gctatacttgaaatatatcagcttaaattttaaacaatttctctaatttctttttcatgaagcaagatatagagcagaatttagcctttgtagttacttc |
785 |
Q |
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| T |
36957548 |
gctatacttgaaatatatcagcttaaattttaaacaatttctctaatttctttttcatgaagcaagatatagagcagaatttagcctttgtagttacttc |
36957449 |
T |
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| Q |
786 |
ttcccaaaaatcaagcttaattctaagaaaataatgtgccaaatctggttcaatcag |
842 |
Q |
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| T |
36957448 |
ttcccaaaattcaagcttaattctaagaaaataatgtgccaaatctggttcaatcag |
36957392 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 34380824 - 34380888
Alignment:
| Q |
156 |
gtttctgttttcacttttggggcatgtatatcggtcaaaacggggctaactgtagccatagtcct |
220 |
Q |
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| T |
34380824 |
gtttctgttttcacttttggagcttgtatattggtgaaaaccgagctaactgcagccacagtcct |
34380888 |
T |
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