View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_low_11 (Length: 398)
Name: NF11927_low_11
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 39641362 - 39641751
Alignment:
| Q |
1 |
caaacaaaacaaactactataatagtctaagatgcgataataattatctggattccggagttcctgcggactccagtaaagtctagctagttattgttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39641362 |
caaacaaaacaaactactataatagtctaagatgcgataataattatctggattccggagttcctgcggagtccagtaaagtctagctagttattgttct |
39641461 |
T |
|
| Q |
101 |
agataacaatcaaactcaagtgcgctcatattcattcaaccttaactaaaacttattaaccggttgactcaaaccattgattatatttgaagttggtatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641462 |
agataacaatcaaactcaagtgcgctcatattcattcaaccttaactaaaacttattaaccggttgactcaaaccattgattatatttgaagttggtatg |
39641561 |
T |
|
| Q |
201 |
ctactaataatgaattcaagttaataaattggcatgtatgttatatgtgtgatatgaaatgattcaaatagagc---------atatatatacctatctc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39641562 |
ctactaataatgaattcaagttaataaattggcatgtatgttatatgtatgatatgaaatgattcaaatagagcatatatataatatatatacctatctc |
39641661 |
T |
|
| Q |
292 |
caatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatcccaagctcttcacactccttaatctgttcat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641662 |
caatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatcccaagctcttcacactccttaatctgttcat |
39641751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 254 - 381
Target Start/End: Complemental strand, 39680625 - 39680498
Alignment:
| Q |
254 |
atgaaatgattcaaatagagcatatatatacctatctccaatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatccca |
353 |
Q |
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|||| ||||||| || |||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39680625 |
atgatatgattctaaaagagcatatacatacctatcaccaataggcttggtaaaaatctgaagcagagtaccctgatcatctctatcaaccagaatccca |
39680526 |
T |
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| Q |
354 |
agctcttcacactccttaatctgttcat |
381 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
39680525 |
agctcttcacactccttaatctgttcat |
39680498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 259 - 381
Target Start/End: Original strand, 39637000 - 39637122
Alignment:
| Q |
259 |
atgattcaaatagagcatatatatacctatctccaatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatccc-aagct |
357 |
Q |
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|||||||||| ||| ||| || ||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
39637000 |
atgattcaaaaagatcat-tacatacctatcaccaataggcttagtaaaaatctgaagcaaagtaccctgatcatctctatcaaccaaaatcccaaagct |
39637098 |
T |
|
| Q |
358 |
cttcacactccttaatctgttcat |
381 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39637099 |
cttcacactccttaatctgttcat |
39637122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 7055513 - 7055613
Alignment:
| Q |
281 |
atacctatctccaatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatcccaagctcttcacactccttaatctgttca |
380 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7055513 |
atacctatctccaacaggcttagtgaaaatctgaagaatagtaccctgatcatctctatcaaccaaaattccaagctcttcacactccttaatctgttca |
7055612 |
T |
|
| Q |
381 |
t |
381 |
Q |
| |
|
| |
|
|
| T |
7055613 |
t |
7055613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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