View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_low_15 (Length: 330)
Name: NF11927_low_15
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 18093938 - 18093641
Alignment:
| Q |
20 |
tctaccaataacccatgcattaaccaacacttgtgcatcttttggaataatgtattcaccaatttcaacatcggtttctgctttgcgaggtaataacaag |
119 |
Q |
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| T |
18093938 |
tctaccaatcacccatgcattaaccaacacttgtgcatcttttggaataatgtattcaccaatttcaacatcgatttctgctttgcgaggtaataacaag |
18093839 |
T |
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| Q |
120 |
ggaactggtggatgtaaacgaaatgtttcttttataactgcttgcatgtatggtaacttagctatgtctgtttcttgtattggaatacctttgccaacaa |
219 |
Q |
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| T |
18093838 |
ggaactggtggatgtaaacgaaatgtttcttttataactgcttgcatgtatggtaacttagctatgtctgtttcttgtattggaatacctttgccaacaa |
18093739 |
T |
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| Q |
220 |
cttgttcaagttctttttgtacttttgacatgatttttggattgtgcattaactctgccattgcccattctagtgtgtatgttgttgtctctgctcct |
317 |
Q |
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| T |
18093738 |
cttgttcaagttccttttgtacttttaacatgatttctggattgtgcattaactctgccattgcccattctagagtgtatgttgttgtgtctgttcct |
18093641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 18103946 - 18103649
Alignment:
| Q |
20 |
tctaccaataacccatgcattaaccaacacttgtgcatcttttggaataatgtattcaccaatttcaacatcggtttctgctttgcgaggtaataacaag |
119 |
Q |
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| T |
18103946 |
tctaccaataacccatgcattgatcaaaacttgtgcatcttttggaataatgtagtcaccaacttcaacatctgtttctgctttacgaggaagtaataag |
18103847 |
T |
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| Q |
120 |
ggaactggtggatgtaaacgaaatgtttcttttataactgcttgcatgtatggtaacttagctatgtctgtttcttgtattggaatacctttgccaacaa |
219 |
Q |
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| T |
18103846 |
ggaactgatggatgtaaacgaagagtttcttttataactgcttgcatgtatggtaacttagctatgtctgtttcttgtattggaatacctttgccaacaa |
18103747 |
T |
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| Q |
220 |
cttgttcaagttctttttgtacttttgacatgatttttggattgtgcattaactctgccattgcccattctagtgtgtatgttgttgtctctgctcct |
317 |
Q |
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| T |
18103746 |
cttgttcaagttctttttgtacttttgacatgatttctggattttgcattaactctgccattgcccattctagtgtgtatgttattgtgtctgttcct |
18103649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 29972562 - 29972705
Alignment:
| Q |
20 |
tctaccaataacccatgcattaaccaacacttgtgcatcttttggaataatgtattcaccaatttcaacatcggtttctgctttgcgaggtaataacaag |
119 |
Q |
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|||||||||| |||| |||| ||| |||| ||||||||||||||||| ||||| ||| |||||| |||| || | |||||| ||||| | ||| || |
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| T |
29972562 |
tctaccaatagcccacacattgacccacacatgtgcatcttttggaattgtgtatccacaaatttccacatttgtatttgcttttcgagggactaagaat |
29972661 |
T |
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| Q |
120 |
ggaactggtggatgtaaacgaaatgtttcttttataactgcttg |
163 |
Q |
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| T |
29972662 |
ggaactggagggtgcaatcgaaatgtctcttttattattgcttg |
29972705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 13790029 - 13790083
Alignment:
| Q |
241 |
cttttgacatgatttttggattgtgcattaactctgccattgcccattctagtgt |
295 |
Q |
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| T |
13790029 |
cttttgacataatatttggattgtggagtaattcagccattgcccattctagtgt |
13790083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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