View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_low_16 (Length: 276)
Name: NF11927_low_16
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 29020546 - 29020370
Alignment:
| Q |
15 |
gattctatcagcggtttttagtttaaaatgcattacaagtttttgagagattatcatttttcaattggtactaatgtaacctcgtggactgagagtatct |
114 |
Q |
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| T |
29020546 |
gattctatcagcggtttctagtttaaaatccattacaagtttttgagagattatcatttttcaatttgtactaatgtaacctcgtggactgagagtatct |
29020447 |
T |
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| Q |
115 |
cataaccagttcacacaccataatctctaatacatatattatattacatcaatagcatttctagagcttatgcatatgc |
193 |
Q |
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| T |
29020446 |
c--aaccagttcacacaccataatctctattacatatattatattacatcaatagcatttctagagcttaggcatatgc |
29020370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 29020342 - 29020284
Alignment:
| Q |
191 |
tgcattctttctcttagggaggagttggagttggaagaacaagagtttgaatcaagtga |
249 |
Q |
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| T |
29020342 |
tgcattctttctcttagggaggagttggaggtggaagatcaagagtttgaatcaagtga |
29020284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 797720 - 797675
Alignment:
| Q |
209 |
gaggagttggagttggaagaacaagagtttgaatcaagtgatgaac |
254 |
Q |
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| T |
797720 |
gaggagttggaggtggaagaacaatagtttgaatcaagtgatgaac |
797675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 17990353 - 17990398
Alignment:
| Q |
209 |
gaggagttggagttggaagaacaagagtttgaatcaagtgatgaac |
254 |
Q |
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| T |
17990353 |
gaggagttggaagtggaagaacaatagtttgaatcaagtgatgaac |
17990398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 16190224 - 16190181
Alignment:
| Q |
211 |
ggagttggagttggaagaacaagagtttgaatcaagtgatgaac |
254 |
Q |
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| T |
16190224 |
ggagttggaggttgaagaacaagagtttgaatcaagggatgaac |
16190181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 17693032 - 17692991
Alignment:
| Q |
209 |
gaggagttggagttggaagaacaagagtttgaatcaagtgat |
250 |
Q |
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| T |
17693032 |
gaggagttggagatggaaaaacaagagtttgaatcaagtgat |
17692991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 37853588 - 37853543
Alignment:
| Q |
209 |
gaggagttggagttggaagaacaagagtttgaatcaagtgatgaac |
254 |
Q |
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| T |
37853588 |
gaggagttggaggtggaagcacaagagtttgaatcaagggatgaac |
37853543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 16623301 - 16623268
Alignment:
| Q |
209 |
gaggagttggagttggaagaacaagagtttgaat |
242 |
Q |
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| T |
16623301 |
gaggagttggaggtggaagaacaagagtttgaat |
16623268 |
T |
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