View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_low_17 (Length: 271)
Name: NF11927_low_17
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 278682 - 278935
Alignment:
| Q |
3 |
tggagaagcagagaattcatacattaaatggtgtgccgaaatggctttagctcaaaatattggtgtcccatggatcatgtgcaagcnnnnnnntgctcca |
102 |
Q |
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| T |
278682 |
tggagaagctgggaattcatacattaaatggtgtgccgaaatggctttagctcaaaatattggtgtcccatggatcatgtgcaagcaaaaaaatgctcca |
278781 |
T |
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| Q |
103 |
gccactattatcgatacatgcaatggctattattgtgacactttcaagccaaacaatcctaaaagccctaaaatatttaccgagaattaggttggctggt |
202 |
Q |
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| T |
278782 |
gccactattatcgatacatgcaatggctattattgtgacactttcaagccaaacaatcctaaaagccctaaaatatttacagagaattgggttggctggt |
278881 |
T |
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| Q |
203 |
tccaaaaatggggtgaaaggaggccacatagaacagctgaagattcaggatttt |
256 |
Q |
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| T |
278882 |
tccaaaaatggggtgaaaggaggccacatagaacagctgaagattcagcatttt |
278935 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 250
Target Start/End: Original strand, 9643003 - 9643146
Alignment:
| Q |
107 |
ctattatcgatacatgcaatggctattattgtgacactttcaagccaaacaatcctaaaagccctaaaatatttaccgagaattaggttggctggttcca |
206 |
Q |
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| T |
9643003 |
ctatcatcaatacttgcaatggatattattgtcacaattttcaacctaacaatccaaaaagtcctaaaattttcactgaaaattggattggttggttcca |
9643102 |
T |
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| Q |
207 |
aaaatggggtgaaaggaggccacatagaacagctgaagattcag |
250 |
Q |
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| T |
9643103 |
aaaatggggtgaaagggttccacatagaagtgctgaagattcag |
9643146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 250
Target Start/End: Original strand, 10544949 - 10545092
Alignment:
| Q |
107 |
ctattatcgatacatgcaatggctattattgtgacactttcaagccaaacaatcctaaaagccctaaaatatttaccgagaattaggttggctggttcca |
206 |
Q |
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| T |
10544949 |
ctatcatcaatacttgcaatgggtattattgtcacaattttaaacctaataacccaaaaagtccaaaaatgttcactgaaaattggattggatggtttca |
10545048 |
T |
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| Q |
207 |
aaaatggggtgaaaggaggccacatagaacagctgaagattcag |
250 |
Q |
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| T |
10545049 |
aaaatggggtgaaagagctccacatagaactgctgaagattcag |
10545092 |
T |
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