View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_low_19 (Length: 252)
Name: NF11927_low_19
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 939540 - 939297
Alignment:
| Q |
11 |
cacagacacctagatcctctgtttgagtccccagtcaaataaaatatcaaccatcggatataaaagtataacatgaatctaaccgtcaaaatttgagagg |
110 |
Q |
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| T |
939540 |
cacacacacctagatcctctgtttgagtccccagtcaaataaaatctcaaccatcggatataaaagtataacataaatctaaccgtcaaaatttgagtgg |
939441 |
T |
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| Q |
111 |
aatgcactggactctagacacccacatgtgcaaatgaaaatacgaaaccaaaccaatat--atatgtctgaaagtgaaaccaaaccaaacaaacgattta |
208 |
Q |
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| T |
939440 |
aacgcactggactctagacacccacatgtgcaaatgaaaatacgaaaccaaaccaatatatatatgtctgaaagtgaaaccaaaccaaacaaacgattta |
939341 |
T |
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| Q |
209 |
aactctaataatggccttatcttctacttcactcatttcacctc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
939340 |
aactctaataatggccttatcttctacttcactcatttcacctc |
939297 |
T |
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