View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11927_low_2 (Length: 823)
Name: NF11927_low_2
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_2 |
 | |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 741; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 11 - 807
Target Start/End: Original strand, 31105905 - 31106701
Alignment:
| Q |
11 |
gtgagatgaaaaaatagctagaaagttgttataaatatagagttatattgagttttcttcgccccgaacatccctagtctattgattgtacttggggctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
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| T |
31105905 |
gtgagatgaaaaaatagctagaaagttgttataaatatagagttatattgagttttcttcaccccgaacatccctagtctactggttgtacttggggctt |
31106004 |
T |
|
| Q |
111 |
gggtagttgtgtgtcttgagagagtttacaacttttccgtgcaaaatcaaattcattttatctaactaacatttgtgaaatagaaaatgtcatttgcacc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
31106005 |
gggtagttgtgtgtcttgagagagtttacaacttttccgtgcaaaatcaaactcattttatctaactaacatttgtgaaatagaaaatgtcatttgcatc |
31106104 |
T |
|
| Q |
211 |
taactaggctgtgttaaaggatataataatgtgatctaaaaaatgtcattctatccaaaaatttcttttatcattaaaatgaacagcatttcattttgac |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106105 |
taactaggctgtgttaaaggatataatgatgtgatctaaaaaatgtaattctatccaaaaatttcttttatcattaaaatgaacagcatttcattttgac |
31106204 |
T |
|
| Q |
311 |
atataatgttgatattgaatggttcaaaataatttactctaatggtgctgacaactagcttgtagttttccatcatcttatttagtctcttcaactatat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106205 |
atataatgttgatattgaatggttcaaaataatttactctaatggtgctgacaactagcttgtagttttccatcatcttatttagtctcttcaactatat |
31106304 |
T |
|
| Q |
411 |
gagtgctgatagtttcagtatttctgctaggtctttgatatcccttgaagacactgcttcgggatgctcctgcgttcataaccttgtcatcgttgcattc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106305 |
gagtgctgatagtttcagtatttctgctaggtctttgatatcccttgaagtcactgcttcgggatgctcctgcgttcataaccttgtcatcgttgcattc |
31106404 |
T |
|
| Q |
511 |
gcttccttgtacaccaccgtctctctatttgtgcaagttacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaa |
610 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31106405 |
gcttccttgaacaccaccgtctctctatttgtgcaagtcacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaa |
31106504 |
T |
|
| Q |
611 |
tgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatcgtcactgtcacatacataagaggtgcactggtgttgaaattcctctcag |
710 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106505 |
tgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatcgtcactgtcacatacataagaggtgcactggtgttgaaattcctctcag |
31106604 |
T |
|
| Q |
711 |
acgtcttcttaatataaggtctaaaaaataacatgcaaattctcagcatacgaagacctataaacaacaagaaactttggatctgtttggagataaa |
807 |
Q |
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|
||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31106605 |
acgtcttcttaatataaggtctaaaaaataatatacaaattctcagcatacgaatacctataaacaacaagaaactttggatctgttttgagataaa |
31106701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 530 - 661
Target Start/End: Complemental strand, 31094907 - 31094776
Alignment:
| Q |
530 |
tctctctatttgtgcaagttacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgat |
629 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |||||||||||| || |
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| T |
31094907 |
tctctctatttgtgctagttacttaagttgaagacttggaccatataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgcgac |
31094808 |
T |
|
| Q |
630 |
agtgtttcatgtgcatctaaaaaagtatcatc |
661 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
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|
| T |
31094807 |
ggtgcttcatgtgcatctaaaaaagtatcatc |
31094776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 530 - 665
Target Start/End: Original strand, 31050414 - 31050544
Alignment:
| Q |
530 |
tctctctatttgtgcaagttacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgat |
629 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||| |||||| || || ||||||||||| |||||||||| ||||||||| | |
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| T |
31050414 |
tctctctatttgtgctagttactcaagttgaagacttggaccatatagtatgatcatagttaatacataatgtatttaaaatggttttgttaa-----ac |
31050508 |
T |
|
| Q |
630 |
agtgtttcatgtgcatctaaaaaagtatcatcgtca |
665 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||| |
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| T |
31050509 |
agtgcttcatgtgcatctaaaaaaacatcatcgtca |
31050544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 343 - 451
Target Start/End: Original strand, 31042595 - 31042699
Alignment:
| Q |
343 |
tttactctaatggtgctgacaactagcttgtagttttccatcatcttatttagtctcttcaactatatgagtgctgatagtttcagtatttctgctaggt |
442 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| || || ||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
31042595 |
tttactctaatggtgctgactact----tgtagttctcaattgtcttatttattctattcaactatatgagtggtgatagtttcactatttctgctaggt |
31042690 |
T |
|
| Q |
443 |
ctttgatat |
451 |
Q |
| |
|
||||||||| |
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|
| T |
31042691 |
ctttgatat |
31042699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 598
Target Start/End: Original strand, 31042820 - 31042939
Alignment:
| Q |
482 |
gcgttcataaccttgtcatcgttgcattcgcttccttgtacaccaccgtctctctatttgtgcaagttacgtaag---ttgaagacttggaccatataat |
578 |
Q |
| |
|
|||||| ||||||||| ||||||||| | |||||| | || |||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |
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|
| T |
31042820 |
gcgttcgtaaccttgtagtcgttgcatcctcttcctcgcacgccaccgtctctctatttgtgcaagttacagaagtaattaaagacttggaccatataat |
31042919 |
T |
|
| Q |
579 |
atgataatggtaaatacata |
598 |
Q |
| |
|
||||| ||| |||||||||| |
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|
| T |
31042920 |
atgatcatgataaatacata |
31042939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 31107925 - 31107988
Alignment:
| Q |
386 |
tcttatttagtctcttcaactatatgagtgctgatagtttcagtatttctgctaggtctttgat |
449 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
31107925 |
tcttatttattctcttcaactatatgagtggtgatagtttcatgatttctgctaggtctttgat |
31107988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 577 - 661
Target Start/End: Complemental strand, 21181654 - 21181570
Alignment:
| Q |
577 |
atatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatc |
661 |
Q |
| |
|
|||||||||||||||| | ||||| ||| ||||||||| |||||||||||| | ||||||||| ||||||||||||| |||||| |
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|
| T |
21181654 |
atatgataatggtaaacaattaatgtattaaaaatgattatgttaaatgtgacaatgtttcatgagcatctaaaaaagcatcatc |
21181570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 654
Target Start/End: Complemental strand, 21150347 - 21150284
Alignment:
| Q |
591 |
aatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag |
654 |
Q |
| |
|
|||| |||||| ||||||| ||||| |||||||||||| |||||||||||||||||||| |||| |
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|
| T |
21150347 |
aatatataatgtatttaaattgattatgttaaatgtgagagtgtttcatgtgcatctaataaag |
21150284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 31107828 - 31107895
Alignment:
| Q |
167 |
tttatctaactaacatttgtgaaatagaaaatgtcatttgcacctaactaggctgtgttaaaggatataata |
238 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
31107828 |
tttatctaactaacatttgtgcaatagaaaatgtcatctgcac----agaggctgtgttaaaggatataata |
31107895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 594 - 653
Target Start/End: Complemental strand, 21267230 - 21267171
Alignment:
| Q |
594 |
acataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaa |
653 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||| |||||| |||||||||||||||| |
|
|
| T |
21267230 |
acataatgcatttaaaatgattatgttgaaagtgacggtgttttatgtgcatctaaaaaa |
21267171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 623
Target Start/End: Complemental strand, 21190588 - 21190542
Alignment:
| Q |
577 |
atatgataatggtaaatacataatgcatttaaaatgattttgttaaa |
623 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
21190588 |
atataataatggcaaatacataatgtgtttaaaatgattttgttaaa |
21190542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 525 - 665
Target Start/End: Complemental strand, 3628 - 3488
Alignment:
| Q |
525 |
caccgtctctctatttgtgcaagttacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaat |
624 |
Q |
| |
|
|||| |||||| |||||||| |||||| |||||||||||||||||| ||||||||||| |||| |||||||||||| |||||||||| ||||||||||| |
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|
| T |
3628 |
caccatctctccatttgtgctagttactgaagttgaagacttggaccttataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaat |
3529 |
T |
|
| Q |
625 |
gtgatagtgtttcatgtgcatctaaaaaagtatcatcgtca |
665 |
Q |
| |
|
||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
3528 |
gtggcagtgcttcatgtgcttctaaaaaagtatcatcgtca |
3488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 584 - 654
Target Start/End: Original strand, 65187 - 65257
Alignment:
| Q |
584 |
aatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag |
654 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
65187 |
aatggtaaatatataatgtatttacaatgattatgttaaatgtgatagtgtttcatgtgcatttaaaaaag |
65257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 628
Target Start/End: Original strand, 62015 - 62062
Alignment:
| Q |
581 |
gataatggtaaatacataatgcatttaaaatgattttgttaaatgtga |
628 |
Q |
| |
|
||||||||||||| ||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
62015 |
gataatggtaaattcatcatgtatttgaaatgattttgttaaatgtga |
62062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 3511763 - 3511677
Alignment:
| Q |
49 |
agagttatattgagttttcttcgccccgaacatccctagtctattgattgtacttggggcttgggtagttgtgtgtcttgagagagttt |
137 |
Q |
| |
|
||||||||||||||||||| || || | |||| | ||||||| ||| |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3511763 |
agagttatattgagttttcatcaccac-aacaactctagtcttttgggtgta-ttggggattgggtagttgtgtgtcttgagagagttt |
3511677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 577 - 628
Target Start/End: Original strand, 3441 - 3492
Alignment:
| Q |
577 |
atatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtga |
628 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
3441 |
atatgataattgtaaatacataatgtattcaaaatgattctgttaaatgtga |
3492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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