View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_low_20 (Length: 250)
Name: NF11927_low_20
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30520213 - 30520452
Alignment:
| Q |
1 |
aagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaatgggtgaaagtaatctaaaattctattgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30520213 |
aagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaatgggtgaaagtaatctaaaattcgattgaaa |
30520312 |
T |
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| Q |
101 |
agtaagtacatattagccaattaacgatggttttagtcataatttgaattcaagctctctcaaacgatttttctttaattgaagctcattaacccagtct |
200 |
Q |
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| T |
30520313 |
agtaagtatatattagccaattaacgatggttttagtcataatttgaattcaagctctctcaaacgatttttctttaattgaagctcattaacccagtct |
30520412 |
T |
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| Q |
201 |
cggacacgcatcaatgtgcaacaccaacacgacacctatg |
240 |
Q |
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| T |
30520413 |
cagacacgcatcaatgtgcaacactgacactacacctatg |
30520452 |
T |
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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 48754792 - 48754701
Alignment:
| Q |
1 |
aagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaat-gggtgaaagtaatctaaaatt |
91 |
Q |
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| T |
48754792 |
aagaagattgatagataccaattcaaatgccgtaattttttttcttaaccttcaaattctcgttgaaaatggggtcatagtaatctaaaatt |
48754701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 45385109 - 45385200
Alignment:
| Q |
1 |
aagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaat-gggtgaaagtaatctaaaatt |
91 |
Q |
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|||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||| |||||||| |||| | |||||||||||||| |
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| T |
45385109 |
aagaagattgatagataccaattcaaataccgtaattttttttcttaaccttcaaattctcgttgaaaatggggtcatagtaatctaaaatt |
45385200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 35634091 - 35634183
Alignment:
| Q |
1 |
aagaagattgatagataccaattcaattgccgta-attgtttttgttaaccttcaaattctcattgaaaat-gggtgaaagtaatctaaaatt |
91 |
Q |
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|||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||| |||||||| |||| | |||||||||||||| |
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| T |
35634091 |
aagaagattgatagataccaattcaaatgccgtagtttttttttcttaaccttcaaattctcgttgaaaatggggtcatagtaatctaaaatt |
35634183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42247621 - 42247691
Alignment:
| Q |
1 |
aagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaatggg |
73 |
Q |
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|||||||||||||||||||||||||| ||| | || ||||| ||||||||||||||||| ||||||||||| |
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| T |
42247621 |
aagaagattgatagataccaattcaaatgcgtt--ttttttttcttaaccttcaaattctcgttgaaaatggg |
42247691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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