View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_low_21 (Length: 248)
Name: NF11927_low_21
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 44 - 213
Target Start/End: Original strand, 1980325 - 1980495
Alignment:
| Q |
44 |
taaactaacaattaaaaatatattttaaatatttttgtcattgaagccgtgggaaagaaatcgaagagtcaaccacaaaagagattgaatactacaatac |
143 |
Q |
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| T |
1980325 |
taaactaacaattaaaaatatattttaaatatttttgtcattgaagccgtgggaaagaaatcgaagagtcaaccacaaaagagattgaatactacaatac |
1980424 |
T |
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| Q |
144 |
caatttcattgtcacaacaagtaggggcggagtta-gaaattacagttaaggaggccgagtacaagcaaca |
213 |
Q |
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| T |
1980425 |
ctatttcattgtaacagcaagtaggggcggagctaggaatttccagttaaggaggccgagtacaagcaaca |
1980495 |
T |
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