View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11927_low_23 (Length: 238)

Name: NF11927_low_23
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11927_low_23
NF11927_low_23
[»] chr7 (2 HSPs)
chr7 (16-238)||(24064270-24064492)
chr7 (41-238)||(8848451-8848648)
[»] chr6 (3 HSPs)
chr6 (61-238)||(20853368-20853545)
chr6 (100-238)||(34065540-34065678)
chr6 (129-191)||(17118843-17118905)
[»] chr2 (3 HSPs)
chr2 (73-238)||(27521315-27521480)
chr2 (49-238)||(21810410-21810599)
chr2 (178-238)||(19698796-19698856)
[»] chr4 (2 HSPs)
chr4 (49-238)||(16985352-16985541)
chr4 (132-236)||(22642107-22642211)
[»] chr5 (2 HSPs)
chr5 (130-238)||(23955937-23956045)
chr5 (48-238)||(26468098-26468288)
[»] chr8 (1 HSPs)
chr8 (90-238)||(15940382-15940527)
[»] chr3 (3 HSPs)
chr3 (176-238)||(24675243-24675305)
chr3 (35-238)||(4647352-4647555)
chr3 (100-237)||(28737123-28737260)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 24064270 - 24064492
Alignment:
Q  16 caatgactagggggccttaatccattaaagtcacctctaccccttccttgaggtttacgtgaatcaacatcattaacaatggacaaaggttcatcaatgg 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  24064270 caatgactagggggcctgaatccattaaagtcacctctacccctttcttgagttttacgtgaatcagcatcattaacaatggacaaaggttcatcaatgg 24064369  T
Q  116 aggaagataaataatgattattgctttcttcctgaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataagcacctgagtcttaac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24064370 aggaagataaataatgattattgctttcttcctgaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataagcacctgagtcttaac 24064469  T
Q  216 tacattgaattgatcattcaaac 238  Q
    |||||||||||||||||||||||    
T  24064470 tacattgaattgatcattcaaac 24064492  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 8848648 - 8848451
Alignment:
Q  41 taaagtcacctctaccccttccttgaggtttacgtgaatcaacatcattaacaatggacaaaggttcatcaatggaggaagataaataatgattattgct 140  Q
    |||||| || ||| || ||||||||||| || | ||||||| || |||||| |||||| ||||||||||||||||||||||| |   ||||| |||| ||    
T  8848648 taaagtaacatcttcctcttccttgaggcttgcatgaatcagcaacattaataatggataaaggttcatcaatggaggaagagagggaatgagtattact 8848549  T
Q  141 ttcttcctgaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgatcattcaaac 238  Q
     || || ||||||| ||| || || || || ||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||||||    
T  8848548 ctcatcttgaataaccaaagagtacactttgttgatagaaggaagtggatcaagcataagcacttgagtcttaataacattgaattgatcattcaaac 8848451  T

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Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 20853368 - 20853545
Alignment:
Q  61 ccttgaggtttacgtgaatcaacatcattaacaatggacaaaggttcatcaatggaggaagataaataatgattattgctttcttcctgaataaacaatg 160  Q
    ||||| || |||||||| |||||| ||||||||||||||||||| || ||||| |  ||||| | | | |||||||| |||||||| |||| || |||||    
T  20853368 ccttgtggcttacgtgattcaacaacattaacaatggacaaaggctcgtcaataggagaagagagagattgattattactttcttcttgaacaaccaatg 20853467  T
Q  161 aataaaccttattgatagaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgatcattcaaac 238  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||| || || ||||||||||| ||||||||||    
T  20853468 aataaaccttgttgatagaaggaagtggatcaagcataagcacttgagttttcacaacattgaattggtcattcaaac 20853545  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 34065678 - 34065540
Alignment:
Q  100 aaaggttcatcaatggaggaagataaataatgattattgctttcttcctgaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataa 199  Q
    ||||||||||||||||||||   |||  ||  ||| |||||||| || || |||| |||||| || || || || || || || ||||||||||| ||||    
T  34065678 aaaggttcatcaatggaggagtgtaatgaactattgttgctttcctcttgtataaccaatgagtatactttgttaattgaggggagtggatcaagcataa 34065579  T
Q  200 gcacctgagtcttaactacattgaattgatcattcaaac 238  Q
    |||||||||||||||  || |||||||||||||||||||    
T  34065578 gcacctgagtcttaatcacgttgaattgatcattcaaac 34065540  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 17118905 - 17118843
Alignment:
Q  129 atgattattgctttcttcctgaataaacaatgaataaaccttattgatagaaggaagtggatc 191  Q
    |||||| ||||||||||||||| | | |||||||||||| || || ||||||||||| |||||    
T  17118905 atgattgttgctttcttcctgagtgaccaatgaataaactttgttaatagaaggaagaggatc 17118843  T

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Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 238
Target Start/End: Original strand, 27521315 - 27521480
Alignment:
Q  73 cgtgaatcaacatcattaacaatggacaaaggttcatcaatggaggaagataaataatgattattgctttcttcctgaataaacaatgaataaaccttat 172  Q
    ||||| ||| || |||||||||  |||||||| ||||||||||  ||||| | | | | |||||||||||||||||||| || ||||||||| ||||| |    
T  27521315 cgtgattcagcagcattaacaagagacaaaggctcatcaatgggtgaagaaagagacttattattgctttcttcctgaacaaccaatgaatacaccttgt 27521414  T
Q  173 tgatagaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgatcattcaaac 238  Q
    |||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||||    
T  27521415 tgatagaaggaagtggatcaagcataagcacctgagttttcacaacattgaattgatcattcaaac 27521480  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 21810410 - 21810599
Alignment:
Q  49 cctctaccccttccttgaggtttacgtgaatcaacatcattaacaatggacaaaggttcatcaatggaggaagataaataatgattattgctttcttcct 148  Q
    |||||||| || |||||||||||||||||||||    |||||||||  || |||||||||| |||||| |||| |||  |  ||||||||||||||||||    
T  21810410 cctctacctctaccttgaggtttacgtgaatcagtggcattaacaacagagaaaggttcattaatggaagaagttaatgagagattattgctttcttcct 21810509  T
Q  149 gaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgatcattcaaac 238  Q
    ||| || ||||||||| ||||| || ||||||||||||||||| || || ||||| || |||||||| || |||||||||||||||||||    
T  21810510 gaacaaccaatgaatagaccttgttaatagaaggaagtggatctagcatgagcacttgtgtcttaacaacgttgaattgatcattcaaac 21810599  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 19698856 - 19698796
Alignment:
Q  178 gaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgatcattcaaac 238  Q
    |||||||| |||||||| || || | ||| ||||| ||||| |||||||||||||||||||    
T  19698856 gaaggaagaggatcaagcatgagaatctgtgtcttcactacgttgaattgatcattcaaac 19698796  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 16985541 - 16985352
Alignment:
Q  49 cctctaccccttccttgaggtttacgtgaatcaacatcattaacaatggacaaaggttcatcaatggaggaagataaataatgattattgctttcttcct 148  Q
    |||||||| || ||||||||||||||||||| |    |||||||||  || |||||||||| |||||| |||| |||  |  ||||||||||||||||||    
T  16985541 cctctacctctaccttgaggtttacgtgaattagtggcattaacaacagagaaaggttcattaatggaagaagttaatgagagattattgctttcttcct 16985442  T
Q  149 gaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgatcattcaaac 238  Q
    ||| || ||||||||| ||||| || ||||||||||||||||| || || |||||||| |||||||| || |||||||||||||||||||    
T  16985441 gaacaaccaatgaatagaccttgttaatagaaggaagtggatctagcatgagcacctgtgtcttaacaacgttgaattgatcattcaaac 16985352  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 22642211 - 22642107
Alignment:
Q  132 attattgctttcttcctgaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgatca 231  Q
    ||||||||| ||||| ||||| | ||  |||||||||||||| | |||||| || |||||||| |  || | ||||||||| || |||  ||||||||||    
T  22642211 attattgctctcttcttgaatcaccatagaataaaccttattcaaagaaggtagaggatcaagcaatagaatctgagtctttaccacagagaattgatca 22642112  T
Q  232 ttcaa 236  Q
    |||||    
T  22642111 ttcaa 22642107  T

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Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 23956045 - 23955937
Alignment:
Q  130 tgattattgctttcttcctgaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgat 229  Q
    |||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || || |||||||||||||    
T  23956045 tgattattgctttcttcctgaacaaccaatgaatacaccttgttgatagaaggaagtggatcaagcataagcacctgagttttcacaacattgaattgat 23955946  T
Q  230 cattcaaac 238  Q
    |||||||||    
T  23955945 cattcaaac 23955937  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 26468098 - 26468288
Alignment:
Q  48 acctctaccccttccttgaggtttacgtgaatcaacatcattaacaatggacaaaggttcatcaatggaggaagataaataatgattattgctttcttcc 147  Q
    ||||||||| || ||||||||||||||||||||| || |||| ||||  || |||||||||  ||| || ||||  | | |  |||||||||||||||||    
T  26468098 acctctacctctaccttgaggtttacgtgaatcagcagcattcacaacagaaaaaggttcagtaattgaagaagccagagatagattattgctttcttcc 26468197  T
Q  148 tgaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgatcattcaaac 238  Q
    |||| ||  |   |||| ||| | || || || ||||  |||||||| || || | ||| ||||| ||||| |||||||||||||||||||    
T  26468198 tgaacaacaagataatataccctgttaatggagggaataggatcaagcatgagaatctgtgtcttcactacgttgaattgatcattcaaac 26468288  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 238
Target Start/End: Complemental strand, 15940527 - 15940382
Alignment:
Q  90 aacaatggacaaaggttcatcaatggaggaagataaataatgattattgctttcttcctgaataaacaatgaataaaccttattgatagaaggaagtgga 189  Q
    ||||||||||| |||||||||||||| |||||||| | |||||||||| ||  |||||||||||| |||||||||||||   |||| ||||||||| |||    
T  15940527 aacaatggacagaggttcatcaatgggggaagatagagaatgattattactcgcttcctgaataaccaatgaataaacc---ttgacagaaggaagggga 15940431  T
Q  190 tcaagtataagcacctgagtcttaactacattgaattgatcattcaaac 238  Q
    ||||| |||||||||||||| || || |||||||| || ||||||||||    
T  15940430 tcaagcataagcacctgagttttcacaacattgaactggtcattcaaac 15940382  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 24675305 - 24675243
Alignment:
Q  176 tagaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgatcattcaaac 238  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||    
T  24675305 tagaaggaagtggatcaagcataagcacctgagtattaaccacattgaattgatcattcaaac 24675243  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 4647352 - 4647555
Alignment:
Q  35 atccattaaagtcacctctaccccttccttgaggtttacgtgaatcaacatcattaacaatggacaaaggttcatcaatggaggaagataaataatgatt 134  Q
    ||||| ||||||  ||||| || |||||||| || || |||||||||||| |||| | ||||||  |||||||| ||||||||||||| |   |||||||    
T  4647352 atccactaaagtatcctcttcctcttccttgtggcttgcgtgaatcaacaacattgataatggatgaaggttcaccaatggaggaagaaagtgaatgatt 4647451  T
Q  135 attgctttcttcctgaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataagcacctgagtcttaactacattgaattgatcattc 234  Q
     || ||||| || || |||| ||   |||| || || ||||||||||||||||||||||  || || || ||||| || |  || |||||||||||||||    
T  4647452 gttactttcctcttggataaccacaaaatatactttgttgatagaaggaagtggatcaatcatcagtacttgagttttgataactttgaattgatcattc 4647551  T
Q  235 aaac 238  Q
    ||||    
T  4647552 aaac 4647555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 28737260 - 28737123
Alignment:
Q  100 aaaggttcatcaatggaggaagataaataatgattattgctttcttcctgaataaacaatgaataaaccttattgatagaaggaagtggatcaagtataa 199  Q
    ||||||||||||||||||||   |||  ||  ||| |||||||| || || |||| |||||| || || || || || || || ||||||||||| || |    
T  28737260 aaaggttcatcaatggaggagtgtaatgaactattgttgctttcctcttgtataaccaatgagtatactttgttaattgaggggagtggatcaagcatga 28737161  T
Q  200 gcacctgagtcttaactacattgaattgatcattcaaa 237  Q
    ||| |||||||||||  |||||||||||||||||||||    
T  28737160 gcatctgagtcttaatcacattgaattgatcattcaaa 28737123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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