View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_low_5 (Length: 608)
Name: NF11927_low_5
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_5 |
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| [»] scaffold1319 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 16 - 601
Target Start/End: Complemental strand, 5331736 - 5331151
Alignment:
| Q |
16 |
attagcatatgcactcatatagttaacactaatctcatctcatctcatttagataaatcctactactccgatatattatataagaaaaaggtacatgtat |
115 |
Q |
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| T |
5331736 |
attagcatatgcactcatatagttaacactaatctcatctcatctcatttagataaatcctactactccgatatattatataagaaaaaggtacatgtat |
5331637 |
T |
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| Q |
116 |
ttggcccaaatttagaccaatagatatgaattttttcttatatgaaaaatcggagggaatatcaatatgctttatatctgttatgctgtattaatatttc |
215 |
Q |
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| T |
5331636 |
ttggcccaaatttagacgaatagatatgaattttttcttatatgaaaaatcggagggaatatcaatatgctttatatctgttatgctgtattaatatttc |
5331537 |
T |
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| Q |
216 |
ttatttctttttctttgggaagaaaaatgaggttggctaggtgttgattttgaatgcatgcaggcacagctttatttttattgaaagggtatggcgaact |
315 |
Q |
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| T |
5331536 |
ttatttctttttctttgggaagaaaaatgaggttggctaggtgttgattttgaacgcatgcaggcacagctttatttttattgaaagggtatggcgaact |
5331437 |
T |
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| Q |
316 |
cgctgatcaaaaggaagaaaatgatttgacagctctacaattgctagccaaaatgccttctgcatttaagagtcaaacccagatgcgagcctttgaaaat |
415 |
Q |
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| T |
5331436 |
cgctgttcaaaaggaagaaaatgatttgacagctctacaattgctagccaaaatgccttctgcatttaagagtcaaacccagatgcgagcctttgaaaat |
5331337 |
T |
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| Q |
416 |
ttcatatatcctcgtaaatctctgataactttatctctaagtaataagcatgcacgcatatatatccagaaacacaacacatcatttcttttttcttctt |
515 |
Q |
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| T |
5331336 |
ttcatatatcctcgtaaatctctgataactttatctctaagtaataagcatgcacgcatatatatacagaaacataacacatcatttcttttttcttttt |
5331237 |
T |
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| Q |
516 |
tgtgtcaaaatcacaccagttttatgaagtttgaacttgcaaattaagctcatataattacatccaaaagcaccttttcctttgct |
601 |
Q |
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| T |
5331236 |
tgtgtcaaaatcacaccagttttatgaagtttgaactttcaaattaagctcatataattacatccaaacacaccttttcctttgct |
5331151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 274 - 478
Target Start/End: Original strand, 5315118 - 5315322
Alignment:
| Q |
274 |
tgcaggcacagctttatttttattgaaagggtatggcgaactcgctgatcaaaaggaagaaaatgatttgacagctctacaattgctagccaaaatgcct |
373 |
Q |
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| T |
5315118 |
tgcaggcacagctttatggttattgaaacgatacaatgaactcgctgatctaaaggaacaaaatgacttgacaaccctgcaattgctaacgaaaatgcca |
5315217 |
T |
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| Q |
374 |
tctgcatttaagagtcaaacccagatgcgagcctttgaaaatttcatatatcctcgtaaatctctgataactttatctctaagtaataagcatgcacgca |
473 |
Q |
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|||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||| | |||| |||||||| |||||||||||||||||||| ||| |
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| T |
5315218 |
tctgcattcaagagtcaaacccaaatgggagccttcaaaaatttcatatatcctcgtaattttctgctaactttacctctaagtaataagcatgcatgca |
5315317 |
T |
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| Q |
474 |
tatat |
478 |
Q |
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||||| |
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| T |
5315318 |
tatat |
5315322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1319 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1319
Description:
Target: scaffold1319; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 774 - 736
Alignment:
| Q |
93 |
atataagaaaaaggtacatgtatttggcccaaatttaga |
131 |
Q |
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| T |
774 |
atataagagaaaggtacatgtatttggctcaaatttaga |
736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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