View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11927_low_9 (Length: 456)
Name: NF11927_low_9
Description: NF11927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11927_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 53460882 - 53460439
Alignment:
| Q |
1 |
aaaattgaacattagaaattgcaaaagagaccaggatggaaaaatattttcagaccacgtcgaaaatcacaatctcgctgaatagtggcgatgttgttca |
100 |
Q |
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| T |
53460882 |
aaaattgaacattagaaattgcaaaagagaccacgatggaaaaatattttcagaccatgtcaaaaatcacaatctcgctgaatagtggcgatgttgttca |
53460783 |
T |
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| Q |
101 |
aaagggatcaaaacgggcactatatactatcttaaccacattaatactaaaaattccattagagcccagttaattatt---ttcattttgaaggaccaaa |
197 |
Q |
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| T |
53460782 |
aaagggatcaaaacgggcactatatactatcttaaccacattaatactaaaaattccattagagcctagttaattattcatttcattttgaaggaccaaa |
53460683 |
T |
|
| Q |
198 |
attatgcttttttaggaacnnnnnnnccttccaaccatctaaaacatgttgagtctttattcgccaatcatcattcattttcttttttggatttcaaagg |
297 |
Q |
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| T |
53460682 |
attatgcttttttaggaactttttttccttccaaccatctaaaacatgttgagtctttattcgccaatcatcattcattttcttttttggatttcaaagg |
53460583 |
T |
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| Q |
298 |
ccctatcaaccctagattttttgagataactcacgatgcttttaggtctatgcttgataatgtcaatccctcaaagcaaacttaacttcttcaaggtata |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53460582 |
ccctatcaaccctagattttttgagataactcacgatgcttttaggtctatgcttgataatgtcaatccctcaaagcaaacttaacttcttcaaggtata |
53460483 |
T |
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| Q |
398 |
ttcaattcatccaaaacaatcaatcaaagcaaaaagatggttca |
441 |
Q |
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| T |
53460482 |
ttcaattcatccaaaacaatcaatcaaagcaaaaagatggttca |
53460439 |
T |
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