View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_high_102 (Length: 239)

Name: NF11928_high_102
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_high_102
NF11928_high_102
[»] chr6 (10 HSPs)
chr6 (1-229)||(22898643-22898874)
chr6 (1-182)||(22880755-22880939)
chr6 (117-180)||(22881566-22881629)
chr6 (117-180)||(22899501-22899564)
chr6 (117-178)||(22914535-22914596)
chr6 (94-180)||(21540538-21540621)
chr6 (183-223)||(22880535-22880575)
chr6 (183-221)||(22961379-22961417)
chr6 (183-221)||(23826976-23827014)
chr6 (32-73)||(21540437-21540478)
[»] chr5 (6 HSPs)
chr5 (94-180)||(9833221-9833304)
chr5 (128-185)||(20546802-20546859)
chr5 (94-180)||(6531177-6531260)
chr5 (120-180)||(21371648-21371711)
chr5 (139-185)||(16833951-16833997)
chr5 (117-153)||(21370215-21370251)
[»] chr7 (7 HSPs)
chr7 (118-179)||(43574883-43574944)
chr7 (117-183)||(35541885-35541951)
chr7 (128-180)||(9418029-9418081)
chr7 (94-177)||(38130016-38130096)
chr7 (133-182)||(43576060-43576109)
chr7 (94-178)||(35543200-35543281)
chr7 (22-93)||(38129905-38129980)
[»] chr8 (2 HSPs)
chr8 (131-178)||(38364821-38364868)
chr8 (128-180)||(38365629-38365681)
[»] chr2 (3 HSPs)
chr2 (131-183)||(43700517-43700569)
chr2 (122-184)||(16147665-16147727)
chr2 (145-178)||(43699905-43699938)
[»] chr4 (3 HSPs)
chr4 (128-182)||(52757475-52757529)
chr4 (21-68)||(23186934-23186981)
chr4 (142-180)||(23187748-23187786)
[»] chr3 (5 HSPs)
chr3 (96-180)||(20405380-20405461)
chr3 (94-177)||(20406497-20406575)
chr3 (21-73)||(5118994-5119046)
chr3 (128-180)||(5119158-5119210)
chr3 (128-180)||(25707293-25707344)
[»] chr1 (1 HSPs)
chr1 (135-177)||(7163164-7163206)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 22898874 - 22898643
Alignment:
Q  1 tgtaaataggaccggaggtagtatttggaagatgaatatttagtttttcaaaaaatacaataaatagagtggtagaggagagagatggagggaaattaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22898874 tgtaaataggaccggaggtagtatttggaagatgaatatttagtttttcaaaaaatacaataaatagagtggtagaggagagagatggagggaaattaat 22898775  T
Q  101 atgatagtttttcttttt---gaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaacccatttatattttagtgtt 197  Q
    |||||||||||| |||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22898774 atgatagtttttttttttttgaaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaacccatttatattttagtgtt 22898675  T
Q  198 attatgattcaaaaattgcttttctccctatg 229  Q
    ||||||||||||||||||||||||||| ||||    
T  22898674 attatgattcaaaaattgcttttctccttatg 22898643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 22880939 - 22880755
Alignment:
Q  1 tgtaaataggaccggaggtagtatttggaagatgaatatttagtttttcaaaaaatacaataaatagagtggtagaggagagagatggagggaaattaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22880939 tgtaaataggaccggaggtagtatttggaagatgaatatttagtttttcaaaaaatacaataaatagagtggtagaggagagagatggagggaaattaat 22880840  T
Q  101 atgatagtttttcttttt---gaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaacccat 182  Q
    |||||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22880839 atgatagtttttttttttttgaaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaacccat 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 22881566 - 22881629
Alignment:
Q  117 ttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  22881566 ttgaaaaaagaggtacatttattgcaccttatcctatgcaatgttgcataggttagaaaaaccc 22881629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 22899501 - 22899564
Alignment:
Q  117 ttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  22899501 ttgaaaaaagaggtacatttattgcaccttatcctatgcaatgttgcataggttagaaaaaccc 22899564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 22914535 - 22914596
Alignment:
Q  117 ttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaac 178  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  22914535 ttgaaaaaagaggtacatttattgcaccttatcctatgcaatgttgcataggttagaaaaac 22914596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 21540538 - 21540621
Alignment:
Q  94 aattaatatgatagtttttctttttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    ||||||| ||||||||||| ||   ||||||||||||||||||||||||||||||  ||||  ||||| ||||||||||||||||||    
T  21540538 aattaatttgatagtttttgtt---gaaaaaagaggtacatttattacaccttatcttatgtcatgttacataggttagaaaaaccc 21540621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 22880575 - 22880535
Alignment:
Q  183 ttatattttagtgttattatgattcaaaaattgcttttctc 223  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22880575 ttatattttagtgttattatgattcaaaaattgcttttctc 22880535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 22961379 - 22961417
Alignment:
Q  183 ttatattttagtgttattatgattcaaaaattgcttttc 221  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22961379 ttatattttagtgtcattatgattcaaaaattgcttttc 22961417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 23827014 - 23826976
Alignment:
Q  183 ttatattttagtgttattatgattcaaaaattgcttttc 221  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  23827014 ttatattttagtgtcattatgattcaaaaattgcttttc 23826976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 21540437 - 21540478
Alignment:
Q  32 atgaatatttagtttttcaaaaaatacaataaatagagtggt 73  Q
    |||| |||||||||||||| |||||||||| |||||||||||    
T  21540437 atgactatttagtttttcacaaaatacaatgaatagagtggt 21540478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 9833304 - 9833221
Alignment:
Q  94 aattaatatgatagtttttctttttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    ||||||||||||||||||| ||   ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||    
T  9833304 aattaatatgatagtttttgtt---gaaaaaagaggtacatttattccacctcatcctatgcaatgttgcataggttagaaaaaccc 9833221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 20546859 - 20546802
Alignment:
Q  128 ggtacatttattacaccttattctatgcaatgttgcataggttagaaaaacccattta 185  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||    
T  20546859 ggtacatttattgcaccttatcctatgcaatgttgcataggttagaaaaaccctttta 20546802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 6531260 - 6531177
Alignment:
Q  94 aattaatatgatagtttttctttttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    ||||||||||||||||||| ||   ||||||||||||| ||| ||| |||  ||| |||||||||||||||||||||||||||||||    
T  6531260 aattaatatgatagtttttgtt---gaaaaaagaggtatattcattgcactctatcctatgcaatgttgcataggttagaaaaaccc 6531177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 21371648 - 21371711
Alignment:
Q  120 aaaaaagaggtacatttattacaccttattctatgcaa---tgttgcataggttagaaaaaccc 180  Q
    |||||||||||| ||||||| |||||||| ||||||||   |||||||||| ||||||||||||    
T  21371648 aaaaaagaggtatatttattgcaccttatcctatgcaatgttgttgcatagattagaaaaaccc 21371711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 16833997 - 16833951
Alignment:
Q  139 tacaccttattctatgcaatgttgcataggttagaaaaacccattta 185  Q
    |||||||||| ||||||| |||||||||||| |||||||||| ||||    
T  16833997 tacaccttatcctatgcattgttgcataggtgagaaaaaccctttta 16833951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 21370251 - 21370215
Alignment:
Q  117 ttgaaaaaagaggtacatttattacaccttattctat 153  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  21370251 ttgaaaaaagaggtacatttattgcaccttatcctat 21370215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 43574944 - 43574883
Alignment:
Q  118 tgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaacc 179  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  43574944 tgaaaaaagtggtacatttattgcaccttatcctatgcaatgttgcataggttagaaaaacc 43574883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 35541951 - 35541885
Alignment:
Q  117 ttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaacccatt 183  Q
    |||||| |||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  35541951 ttgaaacaagaggtaaatttattacaccttatcctatgcaatgttgcatacgttagaaagacccatt 35541885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 9418029 - 9418081
Alignment:
Q  128 ggtacatttattacaccttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    |||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  9418029 ggtacatttaatgcaccttatcctatgcaatgttgcataggttagaaaaaccc 9418081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 38130016 - 38130096
Alignment:
Q  94 aattaatatgatagtttttctttttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaa 177  Q
    ||||||||||||||| ||| ||   |||||||| |||||||||||| |||||||| ||||||||| ||| |||||||| |||||    
T  38130016 aattaatatgatagtctttgtt---gaaaaaagtggtacatttattgcaccttatcctatgcaatattgtataggttaaaaaaa 38130096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 43576060 - 43576109
Alignment:
Q  133 atttattacaccttattctatgcaatgttgcataggttagaaaaacccat 182  Q
    ||||||| |||||||||||||  |||||||||||||||||||||| ||||    
T  43576060 atttattgcaccttattctatataatgttgcataggttagaaaaatccat 43576109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 35543200 - 35543281
Alignment:
Q  94 aattaatatgatagtttttctttttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaac 178  Q
    ||||||||||||| ||||| ||   ||||||||||||| ||||||| || ||||| |||| ||| ||||| ||||||| ||||||    
T  35543200 aattaatatgataatttttgtt---gaaaaaagaggtatatttattgcatcttatcctatccaaagttgcctaggttaaaaaaac 35543281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 38129905 - 38129980
Alignment:
Q  22 tatttggaagatgaatatttagtttttcaaaaaatacaataaatagagtgg----tagaggagagagatggaggga 93  Q
    ||||| |||||||| |||||| ||||||| ||||||||||||||| | |||    ||| |||||||||||||||||    
T  38129905 tatttagaagatgattatttaatttttcataaaatacaataaatataatggttaataggggagagagatggaggga 38129980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 38364868 - 38364821
Alignment:
Q  131 acatttattacaccttattctatgcaatgttgcataggttagaaaaac 178  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38364868 acatttattgcaccttattctatgcaatgttgcataggttagaaaaac 38364821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 38365629 - 38365681
Alignment:
Q  128 ggtacatttattacaccttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    |||||||||||| |||||||| |||| |||| |||||||||||| ||||||||    
T  38365629 ggtacatttattgcaccttatcctatacaatattgcataggttaaaaaaaccc 38365681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 43700517 - 43700569
Alignment:
Q  131 acatttattacaccttattctatgcaatgttgcataggttagaaaaacccatt 183  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  43700517 acatttattgcaccttatcctatgcaatattgcataggttagaaaaacccatt 43700569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 16147727 - 16147665
Alignment:
Q  122 aaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaacccattt 184  Q
    ||||| || ||||| | ||| |||||| || |||||| |||||||||||||||||||||||||    
T  16147727 aaaagtggaacattaaataccccttatcctgtgcaatcttgcataggttagaaaaacccattt 16147665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 43699938 - 43699905
Alignment:
Q  145 ttattctatgcaatgttgcataggttagaaaaac 178  Q
    |||| |||||||||||||||||||||||||||||    
T  43699938 ttatcctatgcaatgttgcataggttagaaaaac 43699905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 52757529 - 52757475
Alignment:
Q  128 ggtacatttattacaccttattctatgcaatgttgcataggttagaaaaacccat 182  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||||| |||||    
T  52757529 ggtacatttattgcaccttatcctatgcaatattgcataggttagaaaatcccat 52757475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 23186981 - 23186934
Alignment:
Q  21 gtatttggaagatgaatatttagtttttcaaaaaatacaataaataga 68  Q
    |||||| |||||||| |||||||||||||| |||||||| ||||||||    
T  23186981 gtatttagaagatgactatttagtttttcacaaaatacagtaaataga 23186934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 23187748 - 23187786
Alignment:
Q  142 accttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  23187748 accttatcctatacaatgttgcataggttagaaaaaccc 23187786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 20405461 - 20405380
Alignment:
Q  96 ttaatatgatagtttttctttttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    ||||||||||||||||| ||   |||||||  |||||||||||| ||||||||  || | |||||||||||||||| ||||||||    
T  20405461 ttaatatgatagtttttgtt---gaaaaaaatggtacatttattgcaccttatcttaagtaatgttgcataggttaaaaaaaccc 20405380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 20406497 - 20406575
Alignment:
Q  94 aattaatatgatagtttttctttttgaaaaaagaggtacatttattacaccttattctatgcaatgttgcataggttagaaaaa 177  Q
    ||||||||||||||||||| ||   |||||||  | |||||||||| ||||| || ||||||||||||||||||||||||||||    
T  20406497 aattaatatgatagtttttgtt---gaaaaaat-gatacatttattgcacct-atcctatgcaatgttgcataggttagaaaaa 20406575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 5118994 - 5119046
Alignment:
Q  21 gtatttggaagatgaatatttagtttttcaaaaaatacaataaatagagtggt 73  Q
    |||||| |||||||| |||||||||||||| |||| ||||| |||||||||||    
T  5118994 gtatttagaagatgattatttagtttttcacaaaaaacaatcaatagagtggt 5119046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 5119158 - 5119210
Alignment:
Q  128 ggtacatttattacaccttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    ||||||||||||  | ||||| ||||||||| || ||||||||||||||||||    
T  5119158 ggtacatttattgtatcttatcctatgcaatattacataggttagaaaaaccc 5119210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 25707293 - 25707344
Alignment:
Q  128 ggtacatttattacaccttattctatgcaatgttgcataggttagaaaaaccc 180  Q
    ||||||||||||  || |||| ||||||||||||||||||| |||||||||||    
T  25707293 ggtacatttattgtactttatcctatgcaatgttgcatagg-tagaaaaaccc 25707344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 7163164 - 7163206
Alignment:
Q  135 ttattacaccttattctatgcaatgttgcataggttagaaaaa 177  Q
    ||||| || |||||||||||||||||||| |||||||||||||    
T  7163164 ttattgcatcttattctatgcaatgttgcgtaggttagaaaaa 7163206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University