View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_19 (Length: 556)
Name: NF11928_high_19
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 231 - 530
Target Start/End: Complemental strand, 49099727 - 49099425
Alignment:
| Q |
231 |
tactacttacagtatcaattatca---actcacgattctactcctgtaactactttaattaacaagattactttgcaaacaaagacttattaccatagaa |
327 |
Q |
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| T |
49099727 |
tactacttacagtatcaattatcatcaactcacgattctactcctgtaactactttaattaacaagattactttgcaaacaaagacttattaccatagaa |
49099628 |
T |
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| Q |
328 |
tttaatacaccttgtttagggggccctcccttatttcaaagttatagaattatatacatgagaatgatattctcagaaattatttgcacaaatatagtat |
427 |
Q |
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| T |
49099627 |
tttaatacaccttgtttaggggcccctcccttatttcaaagttatagaattatatacatgagaatgatattctcagaaattatttgcacaaatatagtat |
49099528 |
T |
|
| Q |
428 |
acatttggtaaatttttgtagaaaattatttagttcaaaaatatacaattagaaatattgcaaattgttgggtcattctagagagcctatattattgggg |
527 |
Q |
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| T |
49099527 |
acatttggtaaatttttgtagaaaattatttagttcaaaaatatacaattagaaatattgcaaattgttaggtcattctagagagcctatattattgggg |
49099428 |
T |
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| Q |
528 |
tgg |
530 |
Q |
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||| |
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| T |
49099427 |
tgg |
49099425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 49099970 - 49099744
Alignment:
| Q |
12 |
gagatgaacagagaaagaaggaaagggttaaatgttgtatggcatgtttgttttatctaggaaattatattgattgccttagttaaatatagtggatgag |
111 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49099970 |
gagatgaacagagaaagaagaaaagagttaaatgttgtatgacatgtttgttttatctaggaaattatatcgattgccttagttaaatatagtggatgag |
49099871 |
T |
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| Q |
112 |
ttgatgacttgaattgcacacataatagcactttgacttgtcattattattactgctaaattgtttgcaataagagtgtttatctcttgtttgtcattaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49099870 |
ttgatgacttgaattgcacacataatagcactttgacttgtcattattattactgctaaattgtttgcaataagagtgtttatctcttgtttgtcattaa |
49099771 |
T |
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| Q |
212 |
gtaccaataaaatattaattactactt |
238 |
Q |
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||||||||||||||||||||||||||| |
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| T |
49099770 |
gtaccaataaaatattaattactactt |
49099744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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