View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_high_28 (Length: 467)

Name: NF11928_high_28
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_high_28
NF11928_high_28
[»] chr1 (4 HSPs)
chr1 (105-457)||(2401974-2402333)
chr1 (7-102)||(2402367-2402462)
chr1 (211-297)||(2798497-2798583)
chr1 (362-409)||(2798615-2798662)
[»] chr4 (2 HSPs)
chr4 (100-300)||(4247734-4247931)
chr4 (362-409)||(4247960-4248007)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 105 - 457
Target Start/End: Complemental strand, 2402333 - 2401974
Alignment:
Q  105 ctattttaaaacatttcatccttttcttttttaggtgaacataaattattgattgattttcaannnnnnnngctgacatttttccacttatacaacagga 204  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||        |||||||||||| ||||||||| ||||||    
T  2402333 ctattttaaaacatttcatccttttcttttttatgagaacataaattattgattgattttcaactttttt-gctgacattttttcacttatacgacagga 2402235  T
Q  205 taatgatgcaagggagaaactccgagctcttcttggtttatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataattattctt- 303  Q
    ||||| |||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2402234 taatgttgcaagagagaaactccgagctgttcttgatctatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataattattcttg 2402135  T
Q  304 atttgtatttcttttccatccacttcagtaaattcattactcactgttttatcta-------ccgtaatatgatttaatacattgccatgcactgttcag 396  Q
    | || ||||||||| | || ||||||||||| |||||||||| ||||||||||||       ||||||||||||||||||  ||||||||||||||||||    
T  2402134 aattttatttctttcctattcacttcagtaagttcattactcgctgttttatctaccgtagtccgtaatatgatttaatatgttgccatgcactgttcag 2402035  T
Q  397 gctcttctttcaggtagcattatctatgacgttccctgttaccattcgttagtactccaac 457  Q
    |||||||||||||||| || |||||| ||||||||| ||||||||||||||||||| ||||    
T  2402034 gctcttctttcaggtatcaatatctacgacgttcccagttaccattcgttagtactgcaac 2401974  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 2402462 - 2402367
Alignment:
Q  7 gttccttcgattcttaattcattgaaggttgtacatttggagacagatatagaaattgttgatgtctttgacagagctgttggaattgcaaattct 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||  ||| ||||||||    
T  2402462 gttccttcgattcttaattcattgaaggttgtacatttggagacagataaagcaattgatgatgtctttgacagaactgttgagatttcaaattct 2402367  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 2798497 - 2798583
Alignment:
Q  211 tgcaagggagaaactccgagctcttcttggtttatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataatt 297  Q
    ||||||||||||  ||||| |||| |||||| ||||||||||||| ||||||||| |||||||  ||| |||| |||||||||||||    
T  2798497 tgcaagggagaagttccgatctctgcttggtctatatgtcctgcagtgcttggtaattgctctgtactgcatttaaattttataatt 2798583  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 409
Target Start/End: Original strand, 2798615 - 2798662
Alignment:
Q  362 taatatgatttaatacattgccatgcactgttcaggctcttctttcag 409  Q
    |||| ||||||||||  |||||||||||||||||||||||| ||||||    
T  2798615 taatgtgatttaatatgttgccatgcactgttcaggctcttgtttcag 2798662  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 300
Target Start/End: Original strand, 4247734 - 4247931
Alignment:
Q  100 tctgtctattttaaaacatttcatccttttcttttttaggtgaacataaattattgattgattttcaannnnnnnngctgacatttttccacttatacaa 199  Q
    |||||||||| |||||||||||||| |||  ||| || || ||||||||||||||| |  ||||||||        || ||||||||| |||||| |||     
T  4247734 tctgtctattataaaacatttcatcttttcatttgttgggagaacataaattattgttatattttcaatttttt--gccgacattttttcactta-acag 4247830  T
Q  200 caggataatgatgcaagggagaaactccgagctcttcttggtttatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataattat 299  Q
     | ||  ||| ||||||||||||  ||||| |||| |||||| ||||||||||||| ||||||||| |||||||  ||| |||| |||||||||||||||    
T  4247831 gatgaggatgctgcaagggagaagttccgatctctgcttggtctatatgtcctgcagtgcttggtaattgctctgtactgcatttaaattttataattat 4247930  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 409
Target Start/End: Original strand, 4247960 - 4248007
Alignment:
Q  362 taatatgatttaatacattgccatgcactgttcaggctcttctttcag 409  Q
    |||| ||||||||||  |||||||||||||||||||||||| ||||||    
T  4247960 taatgtgatttaatatgttgccatgcactgttcaggctcttgtttcag 4248007  T

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