View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_3 (Length: 938)
Name: NF11928_high_3
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 835; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 835; E-Value: 0
Query Start/End: Original strand, 19 - 938
Target Start/End: Complemental strand, 8136179 - 8135262
Alignment:
| Q |
19 |
catcacagtaaatattattatgtcattgtagatgaagccaacaataccaccaacaaaattaaacattggctgatgccacatgtttctctattgtctgtgt |
118 |
Q |
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| T |
8136179 |
catcacagtaaatattattatgtcattgtagatgaagccaacaataccaccaacaaaattaaacattggctgatgccacatgtttctctattgtctgtgt |
8136080 |
T |
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| Q |
119 |
cagctcatctttctttgctcctaccactttgcccaaaatttttccttctttcacaaacacaaacgttggcatggcttcaatagcccaatcttgagcaaca |
218 |
Q |
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| T |
8136079 |
cagctcatctttctttgctcctaccactttgcccaaaattgttccttctttcacaaaaacaaacgttggcatggcttcaatagcccaatcttgagcaaca |
8135980 |
T |
|
| Q |
219 |
gactgcaattcaatcaacaaattattcatgattaatatctatttatcgaatttcctgnnnnnnnaggcagagtgcaaaaagttttacactgacgtccaat |
318 |
Q |
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| T |
8135979 |
gactgcaattcaatcaacaaattattcatgattaatatctatttatcgaatttcctgtttttttaggcagagtgcaaaaagttttacactgacgtccaat |
8135880 |
T |
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| Q |
319 |
aaaaatctttagtattttacggtcatttttcaaatggggctacaaagtaggtttatgtgacaacatgatgagttttataactacattacatcctcattaa |
418 |
Q |
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| T |
8135879 |
aaaaatctttagtattttacggtcatttttcaaatggggctacaaagtaggtttatgtgacaacatgattagttttataacgacattacatcctcattaa |
8135780 |
T |
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| Q |
419 |
actcttgtgcaaattaattagaatgtgttaccttcaattcgtccacatccaccttaaggaatatggcatttgtatacttgttggccaactcagcaaggaa |
518 |
Q |
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| T |
8135779 |
actcttgtgcaaattaattagaatgtgttaccttcaattcgtccacatccaccttaaggaatatggcatttgtatacttcttggccaactcagcaaggaa |
8135680 |
T |
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| Q |
519 |
tggtgcaatgaaacggcatggtccacaccaagaagcagtaaaatccacaacaatctggatcaattagaaaggtaagtacatgttaaattttgagataaat |
618 |
Q |
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| T |
8135679 |
tggtgcaatgaaacggcatggtccacaccaagaagcagtaaaatccacaacaatctggatcaattagagaggtaagtacatgttaaattttgagat-aat |
8135581 |
T |
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| Q |
619 |
agggtatatgcactaagttaagatatgatgctaaggtaaaacattnnnnnnnnttgattttgaaaggtttgggaactggagcatgcaatgcagctacaga |
718 |
Q |
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| T |
8135580 |
agggtatatgcactaagttaagatatgatgctaaggtaaaacattaaaaaaaattgattttgaaaggtttgggaactggagcatgcaatgcagctacaga |
8135481 |
T |
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| Q |
719 |
cagaggagcatgtaggtctataattacaatcattagatgatagatatcttcccatacaaacaaaatcatcacattccaacattataaaaatcaccctgtt |
818 |
Q |
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| T |
8135480 |
cagaggagcatgtaggtctataattacaatcattagatgatagatatcttcccatacaaacaaaatcatcacattccaacattataaaaatcaccctgtt |
8135381 |
T |
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| Q |
819 |
gcaattggcacactaggcctacagcactcacatgcatgttttatcaataagtcaggacttactatatctaatcaaatcaatgatattagacaagaaagat |
918 |
Q |
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| T |
8135380 |
gcaattggcacactaggcctacagcactcacatgcatgttttatcaataagtcaggacttactatatctaatc-aatcaatgatattagacaagaaagat |
8135282 |
T |
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| Q |
919 |
gaactgcagaagattgtgaa |
938 |
Q |
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| T |
8135281 |
gaactgcagaagattgtgaa |
8135262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 7353341 - 7353392
Alignment:
| Q |
523 |
gcaatgaaacggcatggtccacaccaagaagcagtaaaatccacaacaatct |
574 |
Q |
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| T |
7353341 |
gcaataaaacggcatggaccacaccatgaagcagtaaaatccaccacaatct |
7353392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 52667013 - 52667065
Alignment:
| Q |
523 |
gcaatgaaacggcatggtccacaccaagaagcagtaaaatccacaacaatctg |
575 |
Q |
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| T |
52667013 |
gcaatgaaacggcacgggccacaccaagaagcagtgaaatcaactacaatctg |
52667065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 517 - 575
Target Start/End: Original strand, 52663780 - 52663838
Alignment:
| Q |
517 |
aatggtgcaatgaaacggcatggtccacaccaagaagcagtaaaatccacaacaatctg |
575 |
Q |
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| T |
52663780 |
aatggggcaatgaaacggcatggaccacagcaagaagcagtactatcaactacaatctg |
52663838 |
T |
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