View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_36 (Length: 424)
Name: NF11928_high_36
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 3958179 - 3958587
Alignment:
| Q |
1 |
aaggtgcaaagctttctttcaagaggaacgaattccctcattctcgaccacataatgagatggattaggaatacatttgtctgacaataacaaatacacc |
100 |
Q |
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| T |
3958179 |
aaggtgcaaagctttctttcaagaggaacgaattccctcattctcgaccacataatgagatggattaggaatacatttgtctgacaataacaaatacgcc |
3958278 |
T |
|
| Q |
101 |
aacttaacataatattgcacaccacccacccaactcaaacgccaagagtcctcttgatgtgagagttgaatcgaagttagaacatcgatattatttgaga |
200 |
Q |
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| T |
3958279 |
aacttaacataatattgcacaccacccacccaactcaaacgccaagagtcctcttgatgtgagagttgaatcgaagttggaacatcgatattatttgaga |
3958378 |
T |
|
| Q |
201 |
tatcaagtgaacaaaacatcctctcgtacaaaacaaaaatgttatctcttagaggaagggggccaagctaaacatgtttccaattttccataaggaatta |
300 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3958379 |
tatcgagtgaataaaacatcctctcgtacaaaacaaaaatgttatctcttagaggaagggggccaagctaaacatgtttccaattttccataaggaatta |
3958478 |
T |
|
| Q |
301 |
gagtgaccatcacccaactttttggataccccttctaagaactacggtaggttatctcttactattcctcagagtaataggctgatgtaataatacacag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3958479 |
gagtgaccatcacccaactttttggataccccttctaagaactaccgtaggttatctcttactattcctcagagtaataggctgatgtaataatacacag |
3958578 |
T |
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| Q |
401 |
agtgtatag |
409 |
Q |
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| T |
3958579 |
agtgtatag |
3958587 |
T |
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