View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_4 (Length: 796)
Name: NF11928_high_4
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 58 - 349
Target Start/End: Complemental strand, 47426387 - 47426089
Alignment:
| Q |
58 |
atacttgaatatgttaggaatgatgatttatatgaagaggtgaggagaaattagtagaggatggagatcgaaagggaggatnnnnnnnttaatgatggtg |
157 |
Q |
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| T |
47426387 |
atacgtgaatatgttaggaatgat---ttatatgaaggggtgaggagaaattagtagaggatggagatcgaaagggaggataaaaaaattaatgatggtg |
47426291 |
T |
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| Q |
158 |
ttaatgtggaggttacggtggaatataatgacaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaat- |
256 |
Q |
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| T |
47426290 |
ttaatgtggaggttacggtggaatataatgacaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaatt |
47426191 |
T |
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| Q |
257 |
----------caaatttacacgcctaaaatgattgttattaatgaggatcgattatgttaatatttttgtagtgaattttgatcgtaataatgtatagtt |
346 |
Q |
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| T |
47426190 |
aaaaacaagacaaatttacacgcctaaaatgattgttattaatgaggatcga-tatgttaatatttttgtagtgaattttgatcgtaataatgtttagtt |
47426092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 361 - 555
Target Start/End: Complemental strand, 47426007 - 47425813
Alignment:
| Q |
361 |
ggcattgtgcgtgatatgccaagacgtatatataaataacaattgttttatcattttctctaggtttttagatgaactaaatctaaatccttgtcacgaa |
460 |
Q |
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| T |
47426007 |
ggcactgtgcgtgatatgccaagacgtatatataaataacaattattttatcattttctctaggtttttagatgaactaaatctaaatccttgtcatgaa |
47425908 |
T |
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| Q |
461 |
caactaattcatgtggtcgataagctattgatctagtcattctccatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
555 |
Q |
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| T |
47425907 |
caactaattcatgtggtcaatccgcaattgatctagtcattcttcatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
47425813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 637 - 782
Target Start/End: Complemental strand, 47425731 - 47425586
Alignment:
| Q |
637 |
ttacactaaagtgaaagcttcttgtataacgaatccttaatcgcattagttactcacatatccaagacacttgattagtagtatggtgtccaaactcact |
736 |
Q |
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| T |
47425731 |
ttacactaaagtgaaagcttcttgtataacaaatccttaatcgcattagttactcacatatccaagacacttgattagtagtatggtgtccaaactcact |
47425632 |
T |
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| Q |
737 |
tgtgtggttgttcaacgcttaatatggatggttatttgggctcccc |
782 |
Q |
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| T |
47425631 |
tgtgtggttgttcaacactcaatatggatggttatttgggctcccc |
47425586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 47426447 - 47426404
Alignment:
| Q |
17 |
atttttgtaacaaaacttgatgtatgttttgtggcaatgctata |
60 |
Q |
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| T |
47426447 |
atttttgtaacaaaacttgatgtatgttttgtagcaatgctata |
47426404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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