View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_43 (Length: 400)
Name: NF11928_high_43
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_43 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 3424515 - 3424911
Alignment:
| Q |
1 |
tttcgcttccatgatggtgtgtcacactcgtaacagagtttttatggccatatcaaggttttgtgatgatggtaacaaatgttttgctgtgatttctcat |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3424515 |
tttcgcttccatgatggtgtgtcacattcgtaacagagtttttatggccatatcaaggttttgtgatgatggtaacaaatgttttgctgtgatttctcat |
3424614 |
T |
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| Q |
101 |
cctgaaaacaggtaatggacccgtatttaaaaccttgtttatgatctaagagtgtctgacgtgtgtttatgtccaacaagatcgacacatgtgattacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3424615 |
cctgaaaacaggtaatggacccgtatttaaaaccttgtttatgatctaagagtgtctgacgtgcgtttatgtccaacaagatcgacacatgtgattacat |
3424714 |
T |
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| Q |
201 |
ttaattatatcannnnnnnncaaatactactagtgttcgtattgtgctagtgttttgtagattactatattttagttgttaaattaatataatatactcc |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3424715 |
ttaattatatca-tttttttcaaatactactagtgttcgtattgtgctagtgttttgtagattac--tattttagttgttaaattaatataatatactcc |
3424811 |
T |
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| Q |
301 |
tttgtttgagtttgaaccaggacctaaaactatttaaccttgactcaaataagtggagctatccaaccccatagcatgaaatctaagggtaaacacttat |
400 |
Q |
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||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3424812 |
tttgtttgagtttgaaccaggacctcacactccttaaccttgactcaaataagtggagctatccaaccccatagcatgaaatcaaagggtaaacacttat |
3424911 |
T |
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