View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_48 (Length: 389)
Name: NF11928_high_48
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 1951720 - 1951848
Alignment:
| Q |
24 |
ctacacttgaaagagaaacatttcaaataatgtaatgtaagctgctgcagacttccaaggaattactttgttattaaatcttgctttgttcctagagtgc |
123 |
Q |
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| T |
1951720 |
ctacacttgaaagagaaacatttcaaataacgtaa-----gctgctgcagacttccaaggaattactttgttattaaatcttgctttgttcctagagtgc |
1951814 |
T |
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| Q |
124 |
caatattaacaagagcagcttggatcaccaacaa |
157 |
Q |
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| T |
1951815 |
caatattaacaagagcagcttggatcaccaacaa |
1951848 |
T |
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Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 1951851 - 1951945
Alignment:
| Q |
287 |
atatataatagcatgctttgacaagttgtactctcccagcaatagagagtagagatgcttttcaagcagataacttggccttgactctctctgct |
381 |
Q |
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| T |
1951851 |
atatataatagcatgctttgacaagttgtactctcccagcaatagagagtagagatgcttttcaagcagataacttggccttgactctgtctgct |
1951945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 13320567 - 13320610
Alignment:
| Q |
319 |
ctcccagcaatagagagtagagatgcttttcaagcagataactt |
362 |
Q |
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| T |
13320567 |
ctcccagcaatagagaggagagatgctttccaggcagataactt |
13320610 |
T |
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