View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_high_51 (Length: 377)

Name: NF11928_high_51
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_high_51
NF11928_high_51
[»] chr8 (2 HSPs)
chr8 (1-365)||(9677252-9677616)
chr8 (5-171)||(9693187-9693353)
[»] chr3 (11 HSPs)
chr3 (46-171)||(5155447-5155572)
chr3 (44-166)||(46550094-46550216)
chr3 (44-169)||(46469867-46469992)
chr3 (39-154)||(51942263-51942378)
chr3 (44-152)||(45901073-45901181)
chr3 (39-101)||(47398194-47398256)
chr3 (60-101)||(46490225-46490266)
chr3 (258-290)||(50328072-50328104)
chr3 (44-167)||(4582312-4582435)
chr3 (37-104)||(46478460-46478527)
chr3 (261-290)||(50328189-50328218)
[»] chr4 (3 HSPs)
chr4 (10-134)||(35160662-35160786)
chr4 (44-104)||(15555247-15555307)
chr4 (37-152)||(35154298-35154413)
[»] chr7 (1 HSPs)
chr7 (56-164)||(17734705-17734813)


Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 9677616 - 9677252
Alignment:
Q  1 tttctgtcctcctcaaagatgcagcttcttccgatagtcctcacctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttcctt 100  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9677616 tttctgtcctcctcaaagatgcagcttcttccggtggtcctcgcctctctttcgccaatggtgtatgggtggagaaaaacctttctcttcaaccttcctt 9677517  T
Q  101 ccaagaaaccatgtctaccgattataaggccactctcgcttctgttgatttcataaacaaggtatgtttgtgtccctcttttcattgctatccatgctgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9677516 ccaagaaaccatgtctaccgattataaggccactctcgcttctgttgatttcataaacaaggtatgtttgtgtcgctcttttcattgctatccatgctgt 9677417  T
Q  201 gcttttattttgtgttaattgattaattaatggatctctaccttcacaaacaattagtttattttatttcataacctaatttagagcaaattttattttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9677416 gcttttattttgtgttaattgattaattaatggatctctaccttcacaaacaattagtttattttatttcataacctaatttagagcaaattttattttc 9677317  T
Q  301 tatttgaagcttttgtgttgttcgtcactaataaatcgtaagcatttagttgagagtcggttctc 365  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9677316 tatttgaagcttttgtgttgttcgtcactaataaatagtaagcatttagttgagagtcggttctc 9677252  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 9693353 - 9693187
Alignment:
Q  5 tgtcctcctcaaagatgcagcttcttccgatagtcctcacctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaa 104  Q
    ||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||    
T  9693353 tgtcctcctcaaagacgcaacttcttccggtggtcctcacctctctttcgccaatggtgtgtgggtagagaaaaccctttctcttcaaccttccttcaaa 9693254  T
Q  105 gaaaccatgtctaccgattataaggccactctcgcttctgttgatttcataaacaaggtatgtttgt 171  Q
    |||||||||||||| |||||||||||  || |  ||||||||||||||   ||||||||||||||||    
T  9693253 gaaaccatgtctactgattataaggctgctttgtcttctgttgatttccggaacaaggtatgtttgt 9693187  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 5155447 - 5155572
Alignment:
Q  46 tctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaagaaaccatgtctaccgattataaggccactctcgcttctgt 145  Q
    |||| |||| ||||||||| ||||| ||  ||| |||||||||||||||||||||| |||||| | ||||  | ||||||||||||||| |   ||||||    
T  5155447 tctccttcgtcaatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctctgattataaggccactttgctttctgt 5155546  T
Q  146 tgatttcataaacaaggtatgtttgt 171  Q
    |||||||| || ||||||||||||||    
T  5155547 tgatttcaaaaccaaggtatgtttgt 5155572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 46550216 - 46550094
Alignment:
Q  44 cctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaagaaaccatgtctaccgattataaggccactctcgcttct 143  Q
    ||||||||||| |||||||| |||| | ||  ||| |||||||||||||||||||||  || |||| ||| |||| ||||||||||||||| | |||||     
T  46550216 cctctctttcgtcaatggtgcgtggattgaacaaaccctttctcttcaaccttcctttgaaaaaactatggctactgattataaggccactttggcttca 46550117  T
Q  144 gttgatttcataaacaaggtatg 166  Q
    |||||||||| ||  ||||||||    
T  46550116 gttgatttcaaaactaaggtatg 46550094  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 46469867 - 46469992
Alignment:
Q  44 cctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaagaaaccatgtctaccgattataaggccactctcgcttct 143  Q
    |||||||||| || |  |||||||||| ||  ||| |||||||||||||||||||||| ||||||| |||  ||| |||||||| |||||| | |||||     
T  46469867 cctctctttcacccaacgtgtgtgggttgatcaaaccctttctcttcaaccttccttcaaagaaacaatggttactgattataaagccactttggcttcc 46469966  T
Q  144 gttgatttcataaacaaggtatgttt 169  Q
    |||||||||   ||||||||||||||    
T  46469967 gttgatttccagaacaaggtatgttt 46469992  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 51942263 - 51942378
Alignment:
Q  39 cctcacctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaagaaaccatgtctaccgattataaggccactctcg 138  Q
    ||||||||||| |||| | ||||||| ||| | || |||| |||||||||||||||||||||| || ||| ||||||  | || |||||||||||| | |    
T  51942263 cctcacctctccttcgtcgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttgg 51942362  T
Q  139 cttctgttgatttcat 154  Q
    |||| |||||||||||    
T  51942363 cttccgttgatttcat 51942378  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 45901073 - 45901181
Alignment:
Q  44 cctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaagaaaccatgtctaccgattataaggccactctcgcttct 143  Q
    ||||||| | ||||||||||||| ||| ||  |||  |||||||||||||||||||||||| |||   |||||| ||||| ||| |||||||| | || |    
T  45901073 cctctctgttgccaatggtgtgttggttgatcaaacactttctcttcaaccttccttccaacaaattgtgtctaacgattttaaagccactctggtttat 45901172  T
Q  144 gttgatttc 152  Q
    |||||||||    
T  45901173 gttgatttc 45901181  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 47398256 - 47398194
Alignment:
Q  39 cctcacctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttc 101  Q
    |||| ||||||||||| |||||| |||||||| ||  ||| ||||||||||||||||||||||    
T  47398256 cctcgcctctctttcgtcaatggcgtgtgggttgaacaaaccctttctcttcaaccttccttc 47398194  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 46490225 - 46490266
Alignment:
Q  60 ggtgtgtgggtggagaaaaacctttctcttcaaccttccttc 101  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  46490225 ggtgtgtgggtggaaaaaaccctttctcttcaaccttccttc 46490266  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 50328072 - 50328104
Alignment:
Q  258 tttattttatttcataacctaatttagagcaaa 290  Q
    |||||||||||||||||||||||||||||||||    
T  50328072 tttattttatttcataacctaatttagagcaaa 50328104  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 4582435 - 4582312
Alignment:
Q  44 cctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaagaaaccatgtctaccgattataaggccactctcgcttct 143  Q
    ||||||||||   ||||| |||||||| ||  ||| || |||||| ||||||||||||||| |||   | ||||  ||||||||||||||  |  |||||    
T  4582435 cctctctttccttaatggagtgtgggttgatcaaagccgttctctgcaaccttccttccaacaaatagtatctaatgattataaggccaccttgtcttct 4582336  T
Q  144 gttgatttcataaacaaggtatgt 167  Q
    ||||||||||  ||||||||||||    
T  4582335 gttgatttcaagaacaaggtatgt 4582312  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 46478460 - 46478527
Alignment:
Q  37 gtcctcacctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaa 104  Q
    |||||| ||||||||||| | | ||||| ||||| ||  ||| |||||||||||||||||||||||||    
T  46478460 gtcctctcctctctttcgtcgacggtgtttgggttgatcaaaccctttctcttcaaccttccttccaa 46478527  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 290
Target Start/End: Original strand, 50328189 - 50328218
Alignment:
Q  261 attttatttcataacctaatttagagcaaa 290  Q
    ||||||||||||||||||||||||||||||    
T  50328189 attttatttcataacctaatttagagcaaa 50328218  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 35160662 - 35160786
Alignment:
Q  10 tcctcaaagatgcagcttcttccgatagtcctcacctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaagaaac 109  Q
    |||||||||| ||  ||||||||| | |||||||||||||||||| | | ||||| ||| |||| |||| ||||||||||||| |||||||| || |||     
T  35160662 tcctcaaagacgctacttcttccggtggtcctcacctctctttcgtcgacggtgtttggctggaaaaaaccctttctcttcaatcttccttcaaacaaat 35160761  T
Q  110 catgtctaccgattataaggccact 134  Q
    | |||||   |||||||||||||||    
T  35160762 cgtgtctgaagattataaggccact 35160786  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 15555247 - 15555307
Alignment:
Q  44 cctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaa 104  Q
    ||||||| ||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||    
T  15555247 cctctctgtcgccaatggtgtgtgggttgagcaaaccctttctcttcaaacttccttccaa 15555307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 35154298 - 35154413
Alignment:
Q  37 gtcctcacctctctttcgccaatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaagaaaccatgtctaccgattataaggccactct 136  Q
    |||||| ||||| ||| | |||| |||||||| |||| |||| |||||||| ||||||||||||| || | | | || |||||||||| ||||||||| |    
T  35154298 gtcctcgcctcttttttgtcaatagtgtgtggctggacaaaaccctttctcctcaaccttccttcaaacatatcgtgactaccgattacaaggccacttt 35154397  T
Q  137 cgcttctgttgatttc 152  Q
      ||||||||||||||    
T  35154398 gtcttctgttgatttc 35154413  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 17734705 - 17734813
Alignment:
Q  56 caatggtgtgtgggtggagaaaaacctttctcttcaaccttccttccaagaaaccatgtctaccgattataaggccactctcgcttctgttgatttcata 155  Q
    ||||||||||||||| ||  ||   ||| ||||||||||||||||| || ||  |||| |||| ||||  || || ||||| ||| |||||||||||||     
T  17734705 caatggtgtgtgggttgaacaatcacttcctcttcaaccttccttcaaacaactcatgactactgatttcaaagcgactcttgctgctgttgatttcatc 17734804  T
Q  156 aacaaggta 164  Q
    |||||||||    
T  17734805 aacaaggta 17734813  T

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