View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11928_high_56 (Length: 364)
Name: NF11928_high_56
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_56 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 26399599 - 26399288
Alignment:
| Q |
17 |
agttgcttgtccatatttttaggcttttagtgtataatttaataaatttttgccaaggaaagattttttctgacagtgaatcgctcctaagttttggggg |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26399599 |
agttgcttgtccatatttttaggcttt-agtgtataatttaataaatttttgccaaggaaagatttttcctgacagtgaatcgctcctaagttttggggg |
26399501 |
T |
|
| Q |
117 |
cgcctccttcttgtcccaaatgtttggaatattattttttagtttgtaaatcaccatcggaccaaatggaaaaacaatgtttttgtcacttctatccaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26399500 |
cgcctccttcttgtcccaaatgtttg--------------------taaatcaccgtcgtaccaaatggaaaaacaatgtttt-gtcacttctatccaac |
26399422 |
T |
|
| Q |
217 |
aatagtttaagactaaaatcatgttcaaacctattattgaaactggactttcgtcttgtctaaataatccacagtaccactagttggggaaacgggacaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26399421 |
aatagtttaagactaaaatcatgttcaaacctattattgaaactggactttcgtcttgtctaaataatccacagtaccactagttggggaaacgggacaa |
26399322 |
T |
|
| Q |
317 |
aaactgaaactggtcatttgctgggttttcacag |
350 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
26399321 |
aaactgaaactggttatttgctgggttttcacag |
26399288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 265
Target Start/End: Complemental strand, 120838 - 120725
Alignment:
| Q |
151 |
ttttttagtttgtaaatcaccatcggaccaaatggaaaaacaatgtttttgtcacttctatccaacaatagtttaagactaaaatcatgttcaaacctat |
250 |
Q |
| |
|
|||||| ||||| ||||||| | ||||||||||||||||||| |||| |||||||| |||||| ||||||| |||| ||||||||||| |||||||| |
|
|
| T |
120838 |
tttttttgtttgaaaatcactgttggaccaaatggaaaaacaacatttt-gtcacttcactccaaccatagtttgagaccaaaatcatgttgaaacctat |
120740 |
T |
|
| Q |
251 |
tattgaaactggact |
265 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
120739 |
tatttaaactggact |
120725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University