View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_high_62 (Length: 332)

Name: NF11928_high_62
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_high_62
NF11928_high_62
[»] chr1 (1 HSPs)
chr1 (24-316)||(32652931-32653223)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 24 - 316
Target Start/End: Original strand, 32652931 - 32653223
Alignment:
Q  24 ataacatacttgcttttgaattacaacagatcttattgggctggagaaaactgctgctgaattccgaccaaagctcattgctgttagtgtgtatcctcca 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  32652931 ataacatacttgcttttgaattacaacagatcttattgggctggagaaaactgctgctgaattccgaccaaagctcattgttgctagtgtgtatcctcca 32653030  T
Q  124 gacgtcgattattctcgcattagaaaagtatgtttattttaatcttcatcatctgcttctatatacaatgtgattttattccttgcgataaactaattgc 223  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32653031 gacgtcaattattctcgcattagaaaagtatgtttattttaatcttcatcatctgcttctgtatacaatgtgattttattccttgcgataaactaattgc 32653130  T
Q  224 atcttttatgcaaggaaagatagcagatgaagtaggtgcnnnnnnnatgatggatatgactcatattcttgggtttgttgccgagtctgtgct 316  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  32653131 atcttttatgcaaggaaagatagcagatgaagtaggtgctttttttatgatggatatgactcatattcttgggtttgttgccgagtctgtgct 32653223  T

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