View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_63 (Length: 331)
Name: NF11928_high_63
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_63 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 23061479 - 23061357
Alignment:
| Q |
19 |
ttaatatccaaagaacaaacgtaccaaaacaatgttaatcacacacccttttactaatatcatccatcctcacgcacacttaagattagacccaacatta |
118 |
Q |
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| T |
23061479 |
ttaatatccaaataacaaatgtaccaaaacaatgttaatcacacccccttttactaatatcattcatcctcacgcacacttaagattagacccaacatta |
23061380 |
T |
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| Q |
119 |
aaacccaacataaaattctcccta |
142 |
Q |
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| T |
23061379 |
aaa-ccaacataaaattctcccta |
23061357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 23061302 - 23061181
Alignment:
| Q |
197 |
ctcaaactaacttcatttatttcattgatctctttgactcaagttctccatcccttctgcgcatgaccttcgtctatcacttgannnnnnnnnncttcat |
296 |
Q |
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| T |
23061302 |
ctcaaactaacttcccatatttcattgatctctttgactgaagttctccgtcccttctgcacatgaccttcgtccatcacctga--ttttttttcttcat |
23061205 |
T |
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| Q |
297 |
gtttctccatctcttattgtctct |
320 |
Q |
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| T |
23061204 |
gtttctccatctcttattgtctct |
23061181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 7202731 - 7202665
Alignment:
| Q |
67 |
ttttactaatatcatccatcctcacgcacacttaagattagacccaacattaaaacccaacataaaat |
134 |
Q |
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| T |
7202731 |
ttttactaatatcatcc-tcctcacacaaagttgaggttagacccaacattaaaacccgacataaaat |
7202665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 7235925 - 7235870
Alignment:
| Q |
67 |
ttttactaatatcatccatcctcacgcacacttaagattagacccaacattaaaac |
122 |
Q |
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| T |
7235925 |
ttttactaatatcattcctcctcacacaaacttgaggttagacccaacattaaaac |
7235870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 49884580 - 49884520
Alignment:
| Q |
68 |
tttactaatatcatccatcctcacgcacacttaagattagacccaacattaaaacccaaca |
128 |
Q |
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| T |
49884580 |
tttactaatatcatccctcctcacatacaagtaagattaggcccagcattaaaatccaaca |
49884520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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