View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_7 (Length: 754)
Name: NF11928_high_7
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_7 |
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| [»] scaffold0741 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 675; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 1 - 714
Target Start/End: Original strand, 20305758 - 20306476
Alignment:
| Q |
1 |
ggaaaaaggggaagcaaacacgtaaaatggtcttggattagaatgttgttgctaacttccaactctccaatgaattttccaattacgtaaacttatggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
20305758 |
ggaaaaaggggaagcaaacacgtaaaatggtcttggattagaatgttgttgctaacttccaattctccaatgaattttccaattacgtaaactaatggaa |
20305857 |
T |
|
| Q |
101 |
caaacgtgatccaattgaattggtgttcaaatgcaactaagccaccaattcaatagcaaacacaatcggtgcagttcacactaacaagaagcaacaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20305858 |
caaacgtgatccaattgaattggtgttcaaatgcaactaagccaccaattcaatagcaaacacaatcggtgcagttcacactaacaagaagcaacaaatt |
20305957 |
T |
|
| Q |
201 |
atccaagaataatataacctgaattgaagaacgacgggttggaaattgtatgaaaaacggcgctcatgctagaaccctagcagagcgtttttcaaccggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20305958 |
atccaagaataatataacctgaattgaagaacgacgggttggaaattgtatgaaaaacggcgctcatgctagaaccctagcagagcgtttttcaactggg |
20306057 |
T |
|
| Q |
301 |
gcatcaacgattaacaattagatcagccatgctatagtgacggtgattgaaacgtctattatttctctctaaccataagagccataaaatgtatgtaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20306058 |
gcatcaacgattaacaattagatcagccatgctatagtgacggtgattgaaacgtctattatttctctctaaccataagagccataaaatgtatgtaact |
20306157 |
T |
|
| Q |
401 |
actgaaaggatcaactcctgtacttgagaacactacctatttttgaaacactattatttctctctaacctatttttgatagtgttcaaccatttccacaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20306158 |
actgaaaggatcaactcctgtacttgagaacactacctatttttcaaacactattatttctctctaacctatttttgatagtgttcaaccatttccacaa |
20306257 |
T |
|
| Q |
501 |
gttgtcttcagattggcagtgaagaagcaaatgcattgaggtttattcaccatgtatacaaagatggaatatagaggttattatatatacaacctctttt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20306258 |
gttgtcttcagattggcagtgaagaagcaaatgcattgaggtttattcaccatgtatacaaagatggaatatagaggttattatatatacaacctctttt |
20306357 |
T |
|
| Q |
601 |
tcttaagcttttaactatgggaagttccttgtggaagaacctccacatcacaaaagttatagtttagggagtg-----aaaggtgaccaaagcattttcc |
695 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
20306358 |
tcttaagcttttaactatgggaagttccttgtggaagaacctccacatcacaaaagttatagtttagggaatgaaattaaaggtgaccaaagcattttac |
20306457 |
T |
|
| Q |
696 |
accaacttaagggaatact |
714 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
20306458 |
accaacttaagggaatact |
20306476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 325 - 714
Target Start/End: Original strand, 20328108 - 20328472
Alignment:
| Q |
325 |
agccatgctatagtgacggtgattgaaacgtctattatttctctctaaccataagagccataaaatgtatgtaactactgaaaggatcaactcctgtact |
424 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
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| T |
20328108 |
agccatgctatagtgacgctgattgaaatgtctattatttctctctaaccataagagccatagaatgtgtgcaactactgaaaggatcaactcctgtact |
20328207 |
T |
|
| Q |
425 |
tgagaacactacctatttttgaaacactattatttctctctaacctatttttgatagtgttcaaccatttccacaagttgtcttcagattggcagtgaag |
524 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20328208 |
tgaga---------------------ctattatttctctctaacctatttttgataatgttcaaccatttccacaagttgtctgcagattggcagtgaag |
20328286 |
T |
|
| Q |
525 |
aagcaaatgcattgaggtttattcaccatgtatacaaagatggaatatagaggttattatatatacaacctctttttcttaagcttttaactatgggaag |
624 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20328287 |
aagcaaatgcattgaggtttattcaccatgtatacaaagatggaatatagaggttat--tatatacaacctctttttcttaagcttttaactatgggaag |
20328384 |
T |
|
| Q |
625 |
ttccttgtggaagaacctccacatcacaaaagttatagtttagggagtgaaaggtgaccaaagcattttccaccaacttaagggaatact |
714 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |
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| T |
20328385 |
ttccttatggaagaacctccacatcacaaaagttatagtttagggaatgaaaggtgaccaaagcattttacaccaa--taagggaatact |
20328472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 26175865 - 26175587
Alignment:
| Q |
1 |
ggaaaaaggggaagcaaacacgtaaaatggtcttggattagaatgttgttgctaacttccaactctccaatgaattttccaattacgtaaa-cttatgga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |
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| T |
26175865 |
ggaaaaaggggaagcaaacacgtaaaatggtcttggattagagtgttgttgctaacttccaattctccaatgaattttccaattacgtaaaactaatgga |
26175766 |
T |
|
| Q |
100 |
acaaacgtgatccaattgaattggtgttcaaatgcaactaagccaccaattcaatagcaaacacaatcggtgcagttcacactaacaagaagcaacaaat |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26175765 |
acaaacgtgatccaattgaattggtgttcaaatgcaactaagccaccaattcaatagcgaacacaatcggtgcagttcacactaacaagaagcaacaaat |
26175666 |
T |
|
| Q |
200 |
tatccaagaataatataacctgaattgaagaacgacgggttggaaattgtatgaaaaacggcgctcatgctagaaccct |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
26175665 |
tatccaagaataatataacctgaattgaagaacgacggattggaaattgaatgaaaaacggcgctcatgctagaaccct |
26175587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0741 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0741
Description:
Target: scaffold0741; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 4669 - 4383
Alignment:
| Q |
1 |
ggaaaaaggggaagcaaacacgtaaaatggtcttggattagaatgttgtt--gctaacttccaactctccaatgaattttccaattacgtaaacttatgg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| |||| |
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|
| T |
4669 |
ggaaaaaggggaagcaaacacgtaaaatggtcttggattagaatgttgttttgctaacttctaattctccaatgaattttccaattacgtaaactaatgg |
4570 |
T |
|
| Q |
99 |
aacaaacgtgatccaattgaattggtgttcaaatgcaactaagccaccaattcaatagcaaacacaatcggtgcagttcacactaacaagaagcaacaaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4569 |
aacaaacgtgatccaattgaattggtgttcaaatgcaactaagccaccacttcaatagcaaacacaatcggtgcagttcacactaacaagaagccacaaa |
4470 |
T |
|
| Q |
199 |
ttatccaagaataatataacctgaattgaagaacgacgggttggaaattgtatgaaaaacggcgctcatgctagaaccctagcagagc |
286 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
4469 |
ttatccaagaataatat-acctgaattgaaaaacgacggattggaaattgtaagaaaaacggcgctcatgctataaccctagcagagc |
4383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 37636486 - 37636745
Alignment:
| Q |
1 |
ggaaaaaggggaagcaaacacgtaaaatggtcttggattagaatgttgtt--gctaacttccaactctccaatgaattttccaattacgtaaacttatgg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
37636486 |
ggaaaaaggggaagcaaacacgtaaaatggtcttggattagaatgttgttttgctaacttccaattctccaatgaattttccaattacgtaaactaatgg |
37636585 |
T |
|
| Q |
99 |
aacaaacgtgatccaattgaattggtgttcaaatgcaactaagccaccaattcaatagcaaacacaatcggtgcagttcacactaacaagaagcaacaaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37636586 |
aacaaacgtgatccaattgaattggtgttcaaatgcaactaagccaccacttcaatagcaaacacaatcagtgcagttcacactaacaagaagcaacaaa |
37636685 |
T |
|
| Q |
199 |
-ttatccaagaataatataacctgaattgaagaacgacgggttggaaattgtatgaaaaac |
258 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37636686 |
tttatccaagaataatat-acctgaattgaagaacgacggattggaaattgtatgaaaaac |
37636745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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