View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_73 (Length: 286)
Name: NF11928_high_73
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_73 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 69 - 277
Target Start/End: Complemental strand, 30512433 - 30512223
Alignment:
| Q |
69 |
aaatcacattttagcaaacaaaataaatgaattcaattgcaaaaataattatgtaactatttattatatggtcaacaatacataccataggaccccct-- |
166 |
Q |
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| T |
30512433 |
aaatcacattttagcaaacaaaataaatgaattcaattgcaaaaataattatgtgactatttattatatggtcaacaatacataccataggaccccctaa |
30512334 |
T |
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| Q |
167 |
nnnnnnnnnnnnnntacataccataggatgtttttgtgcttcggaattttgaatttcatcattgttccctccagattctgaagcagtccttttgcccgtg |
266 |
Q |
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| T |
30512333 |
aaaaaaataaaaaatacataccataggatgtttttgtgtttcggaattttgaatttcatcattgttccctccagattctgaagcagtccttttacccgtg |
30512234 |
T |
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| Q |
267 |
gtttgattctg |
277 |
Q |
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||||||||||| |
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| T |
30512233 |
gtttgattctg |
30512223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 30512526 - 30512451
Alignment:
| Q |
5 |
atgccctgcaagataatgaaaaaacattactattaaatcttgcaagcaatattgaacaagaatgaaatcacatttt |
80 |
Q |
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| T |
30512526 |
atgccctgcaagataatgaaaaaacattactactaaatcttgcaagcaatattgaacaagaatgaaatcacatttt |
30512451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 30534373 - 30534279
Alignment:
| Q |
66 |
atgaaatcacattttagcaaacaaaataaatgaattcaattgcaaaaataattatgtaactatttattatatggtcaacaatacataccatagga |
160 |
Q |
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| T |
30534373 |
atgaaatcacattttagcaaacaaaataaatgaattcaattacaaaaataattatgtaactatttattccatgggcagcaatacataccgtagga |
30534279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 30495392 - 30495299
Alignment:
| Q |
66 |
atgaaatcacattttagcaaacaaaataaatgaattcaattgcaaaaataattatgtaactatttattatatggtcaacaatacataccatagga |
160 |
Q |
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| T |
30495392 |
atgaaatcacattttagcaaataaaa-aaatgaattcaattacaaaaattattatgtaactgtttattctatggtcaataatacataccatagga |
30495299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 30534292 - 30534234
Alignment:
| Q |
181 |
tacataccataggatgtttttgtgcttcggaattttgaatttcatcattgttccctcca |
239 |
Q |
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| T |
30534292 |
tacataccgtaggatgtttttgtccttcagaattttgcatttcatcattgttctctcca |
30534234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 30495312 - 30495260
Alignment:
| Q |
181 |
tacataccataggatgtttttgtgcttcggaattttgaatttcatcattgttc |
233 |
Q |
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|||||||||||||||| |||| | |||| |||||||| ||||||||||||||| |
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| T |
30495312 |
tacataccataggatgattttctccttcagaattttgcatttcatcattgttc |
30495260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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