View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_74 (Length: 286)
Name: NF11928_high_74
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_74 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 3425164 - 3424897
Alignment:
| Q |
18 |
attgacaacatagctgaaataaaaattcctgaaattttcaaattgattgcggattaaacaatccctttggctcttaaacgttgtggtgttgcgacaatag |
117 |
Q |
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| T |
3425164 |
attggcaacatagctgaaataaaaattcctgaaattttcaaattgattgcggattaaacaatccctttggctcttaaacgttgtggtgttgcgacaatag |
3425065 |
T |
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| Q |
118 |
gttttgaatatatcaaaacttacagaaatatatacatctttcataagccagtttggttgtgtcttttgttaattagtttgtcaatcgaacgtgtcttctg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | |
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| T |
3425064 |
gttttgaatatatcaaaacttacagaaatatatacatctttcataagccagtttggttgtgtcttttgttaattagtttgtcaattgaatgtgtcttccg |
3424965 |
T |
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| Q |
218 |
ctagtcaatttgatcactaaaatt----acataagacacatttaggaaacaaaataagtgtttaccct |
281 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3424964 |
ctagtcaatttgatcactaaaattactaacataagacacatttaggaaacaaaataagtgtttaccct |
3424897 |
T |
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