View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_high_75 (Length: 283)

Name: NF11928_high_75
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_high_75
NF11928_high_75
[»] chr4 (12 HSPs)
chr4 (47-196)||(34584557-34584706)
chr4 (205-283)||(44957245-44957324)
chr4 (206-283)||(12756004-12756082)
chr4 (206-283)||(39103865-39103943)
chr4 (206-283)||(49286935-49287013)
chr4 (206-283)||(53973783-53973861)
chr4 (206-283)||(4490876-4490954)
chr4 (206-283)||(31296845-31296923)
chr4 (206-283)||(31975551-31975629)
chr4 (225-283)||(39953910-39953968)
chr4 (206-283)||(40438961-40439039)
chr4 (207-283)||(19594934-19595011)
[»] chr6 (8 HSPs)
chr6 (206-283)||(1705608-1705686)
chr6 (206-283)||(21181141-21181219)
chr6 (206-272)||(1339376-1339443)
chr6 (205-283)||(2994651-2994730)
chr6 (206-283)||(24248806-24248884)
chr6 (205-283)||(14506917-14506996)
chr6 (206-283)||(10965721-10965799)
chr6 (207-283)||(19473674-19473751)
[»] chr1 (2 HSPs)
chr1 (206-283)||(38207857-38207935)
chr1 (206-283)||(7435515-7435593)
[»] chr7 (5 HSPs)
chr7 (206-283)||(21920018-21920096)
chr7 (207-283)||(48460567-48460644)
chr7 (206-281)||(31743302-31743378)
chr7 (206-272)||(31759995-31760062)
chr7 (206-283)||(17833933-17834011)
[»] chr5 (4 HSPs)
chr5 (206-283)||(5140995-5141073)
chr5 (206-283)||(5204945-5205023)
chr5 (206-283)||(40756869-40756947)
chr5 (206-283)||(4429421-4429499)
[»] chr2 (5 HSPs)
chr2 (206-283)||(15362795-15362873)
chr2 (206-283)||(41555751-41555829)
chr2 (206-272)||(4786364-4786431)
chr2 (207-283)||(713676-713753)
chr2 (243-283)||(38600137-38600177)
[»] scaffold0009 (1 HSPs)
scaffold0009 (206-272)||(214142-214209)
[»] chr3 (3 HSPs)
chr3 (205-283)||(43903073-43903152)
chr3 (217-283)||(27102927-27102992)
chr3 (206-283)||(32122226-32122304)
[»] chr8 (1 HSPs)
chr8 (225-283)||(44578981-44579039)
[»] scaffold0131 (1 HSPs)
scaffold0131 (207-283)||(10672-10749)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 47 - 196
Target Start/End: Complemental strand, 34584706 - 34584557
Alignment:
Q  47 aggcacacttcagttccagcggcagcaggttcagccgacgactaacaattgcttggtatggaaactggaaggcgaaaccaatgacttgttttggttacca 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34584706 aggcacacttcagttccagcggcagcaggttcagccgacgactaacaattgcttggtatggaaactggaaggcgaaaccaattacttgttttggttacca 34584607  T
Q  147 gaaagcgaaaccaatgtctgctccaaaatacatttttatttgctacaatt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34584606 gaaagcgaaaccaatgtctgctccaaaatacatttttatttgctacaatt 34584557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 44957324 - 44957245
Alignment:
Q  205 acaaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||||| |||||||||||||||| ||||| ||||||  ||||| ||||||||||||| |||||||||| | ||||||||    
T  44957324 acaaattctatggtacactcaaaaatttgagtgtatcggtacaccaaatcatcaaattcatattgaaacgagttgttttt 44957245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 12756004 - 12756082
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| ||||||  ||||| ||||||||||||| |||||||||| | ||||||||    
T  12756004 caaattctatggtacactcaaaaatttgagtgtatcggtacaccaaatcatcaaattcatattgaaacgagttgttttt 12756082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 39103943 - 39103865
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  39103943 caaattctatggtacactcaaaaatttgagtgtaccggtacactaaatcatcaaatttatattgaaacgagttgttttt 39103865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 49287013 - 49286935
Alignment:
Q  206 caaattatatggtacactcaa-aatttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||| ||||||| |||| |  ||||||||||||||||||| ||||| |||| | ||||||||    
T  49287013 caaattttatggtacactcaataatttgagtgtaccggtacacaaaatcatcaaattcatattaaaacgagttgttttt 49286935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 53973861 - 53973783
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  53973861 caaattctatggtacactcaaaaatttgagtgtaccggtacactaaatcatcaaatttatattgaaacgagttgttttt 53973783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 4490876 - 4490954
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| ||| |||||||||||| ||||| |||| || ||||| ||||||||||||| ||||| |||| | ||||||||    
T  4490876 caaattctatagtacactcaaaaatttgagtgtaccagtacaccaaatcatcaaattcatattaaaacgagttgttttt 4490954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 31296923 - 31296845
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| ||||||||||| |||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  31296923 caaattctatggtacactaaaaaatttgagtgtaccggtacactaaatcatcaaattcatattgaaacgagttgttttt 31296845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 31975551 - 31975629
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| ||||||||||| |||| |||||||||| |  ||||| ||||||||||||| ||||| |||| | ||||||||    
T  31975551 caaattctatggtacacttaaaaatttgaatgtaccggtacaccaaatcatcaaattcatattaaaacgagttgttttt 31975629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 39953968 - 39953910
Alignment:
Q  225 aaaatttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||||||||||| |  ||||| ||||||||||||| |||||||||| |||| |||||    
T  39953968 aaaatttgaatgtaccggtacaccaaatcatcaaattcatattgaaacaaattattttt 39953910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 40439039 - 40438961
Alignment:
Q  206 caaattatatggtacactc-aaaatttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||| ||||||||| |||| |  ||||| ||||||| ||||| |||||||||| | ||||||||    
T  40439039 caaattctatggtacactcaaaaatttgagtgtaccggtacaccaaatcattaaattcatattgaaacgagttgttttt 40438961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 19594934 - 19595011
Alignment:
Q  207 aaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||| ||||||||||| |||| ||||| ||||    ||||||||||||| ||||| |||||||||| ||||||||||    
T  19594934 aaattctatggtacacttaaaaatttgagtgtacttgtacacaaaatcattaaattcatattgaaacgaattgttttt 19595011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 1705608 - 1705686
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| ||||||  ||||| ||||||||||||| |||||||||| | ||||||||    
T  1705608 caaattctatggtacactcaaaaatttgagtgtatcggtacaccaaatcatcaaattcatattgaaacgagttgttttt 1705686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 21181141 - 21181219
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| ||||||  ||||| ||||||||||||| |||||||||| | ||||||||    
T  21181141 caaattctatggtacactcaaaaatttgagtgtatcggtacaccaaatcatcaaatttatattgaaacaagttgttttt 21181219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 1339376 - 1339443
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaac 272  Q
    |||||| ||||||||||| |||| ||||| |||| | |||||| ||||||||||||||||||||||||    
T  1339376 caaattctatggtacacttaaaaatttgagtgtaccgatacaccaaatcatcaaattaatattgaaac 1339443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 2994730 - 2994651
Alignment:
Q  205 acaaattatatggtacactcaaaattt-gaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||||| |||||||||||| |||||| || ||||||  ||||| ||||||||||||| |||||||||| | ||||||||    
T  2994730 acaaattctatggtacactccaaattttgagtgtatcggtacaccaaatcatcaaattcatattgaaacgagttgttttt 2994651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 24248806 - 24248884
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  24248806 caaattctatggtacactcaaaaatttgagtgtaccggtacaccaaatcatcaaatttatattgaaacgagttgttttt 24248884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 14506917 - 14506996
Alignment:
Q  205 acaaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||||| ||||||||||| |||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  14506917 acaaattctatggtacactgaaaaatttgagtgtaccggtacaccaaatcatcaaattcatattgaaacgagttgttttt 14506996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 10965721 - 10965799
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| ||||||||||| |||| ||||| |||| | |||||| ||||||||||||| |||||| ||| | ||||||||    
T  10965721 caaattctatggtacacttaaaaatttgagtgtaccgatacaccaaatcatcaaattcatattgtaacgagttgttttt 10965799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 19473674 - 19473751
Alignment:
Q  207 aaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||| || ||||||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  19473674 aaattctagggtacactcaaaaatttgagtgtaccggtacaccaaatcatcaaattcatattgaaacgagttgttttt 19473751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 38207935 - 38207857
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||||||||||||| ||||||| ||||| ||||||  ||||| ||||||||||||| |||||||||| | ||||||||    
T  38207935 caaattatatggtacgctcaaaaatttgagtgtatcggtacaccaaatcatcaaattcatattgaaacgagttgttttt 38207857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 7435515 - 7435593
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  7435515 caaattctatggtacactcaaaaatttgagtgtaccggtacaccaaatcatcaaatttatattgaaacgagttgttttt 7435593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 21920096 - 21920018
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  21920096 caaattctatggtacactcaaaaatttgagtgtaccggtacaccaaatcatcaaatttatattgaaacgagttgttttt 21920018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 48460644 - 48460567
Alignment:
Q  207 aaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||| |||||||||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  48460644 aaattctatggtacactcaaaaatttgagtgtaccggtacaccaaatcatcaaatttatattgaaacgagttgttttt 48460567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 31743302 - 31743378
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttt 281  Q
    |||||| |||||||||||||||| ||||| |||| || | ||| ||||||||||||||||||| |||| | ||||||    
T  31743302 caaattctatggtacactcaaaaatttgagtgtaccagtgcaccaaatcatcaaattaatattaaaacgagttgttt 31743378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 31759995 - 31760062
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaac 272  Q
    |||||| |||||||||||||||| ||||| |||| |  ||||| ||||||||||||| ||||||||||    
T  31759995 caaattttatggtacactcaaaaatttgagtgtaccggtacaccaaatcatcaaattcatattgaaac 31760062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 17833933 - 17834011
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| |||| |   |||| ||||||||||||| |||||||||| | ||||||||    
T  17833933 caaattctatggtacactcaaaaatttgagtgtaccggcacaccaaatcatcaaattcatattgaaacgagttgttttt 17834011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 5141073 - 5140995
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||||||||| |||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  5141073 caaattatatggcacactcaaaaatttgagtgtaccggtacaccaaatcatcaaattcatattgaaacgagttgttttt 5140995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 5205023 - 5204945
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  5205023 caaattctatggtacactcaaaaatttgagtgtaccggtacaccaaatcatcaaattcatattgaaacgagttgttttt 5204945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 40756947 - 40756869
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  40756947 caaattctatggtacactcaaaaatttgagtgtaccggtacaccaaatcatcaaattcatattgaaacgagttgttttt 40756869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 4429421 - 4429499
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| |||| |  || || ||||||||||||| |||||||||| | ||||||||    
T  4429421 caaattctatggtacactcaaaaatttgagtgtaccggtataccaaatcatcaaattcatattgaaacgagttgttttt 4429499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 15362873 - 15362795
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  15362873 caaattctatggtacactcaaaaatttgagtgtaccggtacaccaaatcatcaaattcatattgaaacgagttgttttt 15362795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 41555829 - 41555751
Alignment:
Q  206 caaattatatggtacactcaaaatttgaa-tgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| || || ||||||  ||||| ||||||||||||| |||||||||| | ||||||||    
T  41555829 caaattctatggtacactcaaaaatttaagtgtatcggtacaccaaatcatcaaattcatattgaaacgagttgttttt 41555751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 4786364 - 4786431
Alignment:
Q  206 caaattatatggtacactcaaaatttgaa-tgtatcaatacacaaaatcatcaaattaatattgaaac 272  Q
    |||||| |||||||||||||||| || || |||| | |||||| ||||||||||||| ||||||||||    
T  4786364 caaattctatggtacactcaaaaatttaagtgtaccgatacaccaaatcatcaaattcatattgaaac 4786431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 713753 - 713676
Alignment:
Q  207 aaattatatggtacactc-aaaatttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||| |||||||||||| ||||||| | ||||||  ||||| |||||||| |||| |||||||||| | ||||||||    
T  713753 aaattctatggtacactcaaaaatttaagtgtatcggtacaccaaatcatctaatttatattgaaacgagttgttttt 713676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 38600177 - 38600137
Alignment:
Q  243 tacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||| ||||||||||||| |||||||||| ||||||||||    
T  38600177 tacaccaaatcatcaaatttatattgaaacgaattgttttt 38600137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 214142 - 214209
Alignment:
Q  206 caaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaac 272  Q
    |||||| |||||||||||||||| ||||| ||||    ||||||||||||||||||| ||||||||||    
T  214142 caaattctatggtacactcaaaaatttgagtgtactggtacacaaaatcatcaaattcatattgaaac 214209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 43903073 - 43903152
Alignment:
Q  205 acaaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||||| ||||||||||| |||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  43903073 acaaattctatggtacacttaaaaatttgagtgtaccggtacaccaaatcatcaaattcatattgaaacgagttgttttt 43903152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 27102992 - 27102927
Alignment:
Q  217 gtacactcaaaatttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||||||||||||||| |||| |  ||||| || ||||||||||||||||||||| | ||||||||    
T  27102992 gtacactcaaaatttgagtgtaccggtacaccaa-tcatcaaattaatattgaaacgagttgttttt 27102927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 32122304 - 32122226
Alignment:
Q  206 caaattatatggtacactcaaaatttgaa-tgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    |||||| |||||||||||||||| || || |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  32122304 caaattctatggtacactcaaaaatttaagtgtaccggtacactaaatcatcaaatttatattgaaacgagttgttttt 32122226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 44579039 - 44578981
Alignment:
Q  225 aaaatttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||||||||| ||||  ||||| ||||||||||||| |||||||||| | ||||||||    
T  44579039 aaaatttgaatatatcggtacaccaaatcatcaaattcatattgaaacgagttgttttt 44578981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 10672 - 10749
Alignment:
Q  207 aaattatatggtacactcaaaa-tttgaatgtatcaatacacaaaatcatcaaattaatattgaaactaattgttttt 283  Q
    ||||| ||||||||||| |||| ||||| |||| |  ||||| ||||||||||||| |||||||||| | ||||||||    
T  10672 aaattctatggtacactaaaaaatttgagtgtaccggtacaccaaatcatcaaattcatattgaaacgagttgttttt 10749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University