View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_8 (Length: 713)
Name: NF11928_high_8
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 36280876 - 36281235
Alignment:
| Q |
18 |
aaatacagtgtaatgaaaatggtgtataaataacattattgttattcctcagtgttttcaagtttgatgttgttgtaaaactgatgattatttcaccttg |
117 |
Q |
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| T |
36280876 |
aaatacagtgtaatgaaaatggtgtataaataacattattgttattcctcagtgttttcaagtttgacgttgttgtaaaactgatgattatttcaccttg |
36280975 |
T |
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| Q |
118 |
attaacttaatcaggaacttaaacctaaacttgttccggagctcctcagggaccaatgcattgtaagacccaatatttgaagttttcctttgttctaatt |
217 |
Q |
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| T |
36280976 |
attaactgaatcaggaacttaaacctaaacttgttccggagctccttagggaccaatgcattgtaagacccaatatttgaatttttcctttgttctaatt |
36281075 |
T |
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| Q |
218 |
atttgagtaaagtatgttgaaaattggagttcaattagtgatatcactgattcaccgttttccttgattcttgaaagacaggggatgcttccatgttcaa |
317 |
Q |
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| T |
36281076 |
atttgagtaaagtatgttgaaaattggagttcaactagtgatatcactgattcaccgttttccttgattcttgaaagacaggggatgcttccatgttcaa |
36281175 |
T |
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| Q |
318 |
ataatttcaaatgtcctagatgtaagtataagtatatattttactgctatatgaatattg |
377 |
Q |
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| T |
36281176 |
ataatttcaaatgtcctagatgtaagtataagtatatattttactgctatatgaatattg |
36281235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 387 - 520
Target Start/End: Original strand, 36284453 - 36284586
Alignment:
| Q |
387 |
catatcttaaacctatgagctgatttgagatttgagctataaaaaataaatagtatatgatgatcatcttggaagtggcatcgtggttgttgcacaaaat |
486 |
Q |
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| T |
36284453 |
catatcttaaacctatgagctgatttgagatttgagttataaaaaataaatagtatatgatgatcatcttggaagtggcatcgtggttgttgcacaaaat |
36284552 |
T |
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| Q |
487 |
cttataagtggcatcatggttgacgcacaaacgt |
520 |
Q |
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| T |
36284553 |
cttataagtggcatcatggtgaacgcacaaacgt |
36284586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 600 - 696
Target Start/End: Original strand, 36284660 - 36284756
Alignment:
| Q |
600 |
agattcaagttgtttgcatgttaattgtggtggaaaggatatacaggtgaaggaaaatggtgaaaatatcctctatattggagatggagatgtggtc |
696 |
Q |
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| T |
36284660 |
agattcaagttgtttgcatgttaattgtggtggaaaggatatacaggtgaaggaaaatggtgaaaatatcctctatattggagatggagatgtggtc |
36284756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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