View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11928_high_81 (Length: 269)
Name: NF11928_high_81
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_81 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 9370264 - 9370513
Alignment:
| Q |
1 |
aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtggcttgacaaggacga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9370264 |
aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtggcttgacaaggacga |
9370363 |
T |
|
| Q |
101 |
gagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtcttcggaatcatgtacgag |
200 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |
|
|
| T |
9370364 |
gagtgcgtttggagaggtaacataatggtgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtttccggaatcatatacgag |
9370463 |
T |
|
| Q |
201 |
tgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaag |
250 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
9370464 |
tgggaatttgatgggtgaagtttgaagatggtgatttggaatggaggaag |
9370513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 9348610 - 9348859
Alignment:
| Q |
1 |
aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtggcttgacaaggacga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9348610 |
aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgatgaattggggtttttccatgttgtggtggcctgacaaggacga |
9348709 |
T |
|
| Q |
101 |
gagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtcttcggaatcatgtacgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
9348710 |
gagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgagagatggtagtttctggaatcatgtacgag |
9348809 |
T |
|
| Q |
201 |
tgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaag |
250 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9348810 |
tgggaataggatgggtgaagtttgacgatggtgatttggaatggaggaag |
9348859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9341327 - 9341396
Alignment:
| Q |
1 |
aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt |
70 |
Q |
| |
|
|||| ||| ||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
9341327 |
aagagtttggttttgccatgtgagttttgagtaaatctaatcaaccaaggacgacgaggaattagggttt |
9341396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 9407962 - 9408006
Alignment:
| Q |
10 |
gtttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
54 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9407962 |
gttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9408006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 9426170 - 9426213
Alignment:
| Q |
11 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
54 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9426170 |
ttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9426213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 9441300 - 9441257
Alignment:
| Q |
11 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
54 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9441300 |
ttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9441257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 9417167 - 9417210
Alignment:
| Q |
11 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
54 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
9417167 |
ttttgccatgtgagttttgggtaactctgatcaaccaaggacga |
9417210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 9353538 - 9353587
Alignment:
| Q |
21 |
tgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt |
70 |
Q |
| |
|
||||||||| |||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
9353538 |
tgagttttgggtaattcgtatcaaccaaggccgacgacgaattagggttt |
9353587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 250861 - 250825
Alignment:
| Q |
21 |
tgagttttgtgtaactctaatcaaccaaggacgacga |
57 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
250861 |
tgagttttgtgtaattctaaacaaccaaggacgacga |
250825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University