View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_high_96 (Length: 242)

Name: NF11928_high_96
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_high_96
NF11928_high_96
[»] chr1 (3 HSPs)
chr1 (18-242)||(49546966-49547190)
chr1 (61-105)||(32123584-32123628)
chr1 (76-117)||(34141638-34141679)
[»] chr3 (4 HSPs)
chr3 (62-105)||(21777206-21777249)
chr3 (61-99)||(42668172-42668210)
chr3 (65-110)||(35586173-35586218)
chr3 (61-112)||(42157733-42157784)
[»] chr5 (4 HSPs)
chr5 (62-112)||(1175862-1175912)
chr5 (62-112)||(12150688-12150738)
chr5 (59-128)||(13839473-13839540)
chr5 (65-111)||(33740020-33740066)
[»] chr8 (2 HSPs)
chr8 (66-117)||(32874844-32874894)
chr8 (62-105)||(39418173-39418216)
[»] chr7 (3 HSPs)
chr7 (61-104)||(13858445-13858488)
chr7 (63-112)||(7181389-7181438)
chr7 (62-130)||(45471832-45471900)
[»] chr4 (2 HSPs)
chr4 (63-117)||(56439290-56439344)
chr4 (61-112)||(34713068-34713117)
[»] chr2 (2 HSPs)
chr2 (63-117)||(5193176-5193229)
chr2 (67-117)||(38216438-38216488)
[»] chr6 (1 HSPs)
chr6 (65-117)||(6695406-6695458)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 49547190 - 49546966
Alignment:
Q  18 agagtaggggggaaattggagaaatcttgcacannnnnnnnatagtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 117  Q
    ||||||| |||||||||||||||||||| ||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547190 agagtagaggggaaattggagaaatcttccacattttttttatagtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 49547091  T
Q  118 ggaagtattattacacaacatagatttcacgaaaccctctttagtacaatatttttagttcccccattttgagggaattttctgttgcaatgaaaaacaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  49547090 ggaagtattattacacaacatagatttcacgaaaccctctttagtacaatatttttagttcccccattttaaggggattttctgttgcaatgaaaaacaa 49546991  T
Q  218 gccccctattcaaagccattccctt 242  Q
    |||||||||||||||||||||||||    
T  49546990 gccccctattcaaagccattccctt 49546966  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 32123628 - 32123584
Alignment:
Q  61 agtgtttttgtagataatgataaatgaatgtttatcattaatata 105  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  32123628 agtgtttttgtaaagaatgataaatgaatgtttatcattaatata 32123584  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 34141679 - 34141638
Alignment:
Q  76 aatgataaatgaatgtttatcattaatatacttttaaatttt 117  Q
    |||||||||| ||||||||| ||||||||| |||||||||||    
T  34141679 aatgataaattaatgtttatgattaatatatttttaaatttt 34141638  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 21777206 - 21777249
Alignment:
Q  62 gtgtttttgtagataatgataaatgaatgtttatcattaatata 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  21777206 gtgtttttgtagagaatgataaatgaatgtttatcattaatata 21777249  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 42668210 - 42668172
Alignment:
Q  61 agtgtttttgtagataatgataaatgaatgtttatcatt 99  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42668210 agtgtttttgtagataatgataaatgaatgtttatcatt 42668172  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 35586173 - 35586218
Alignment:
Q  65 tttttgtagataatgataaatgaatgtttatcattaatatactttt 110  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||    
T  35586173 tttttgtagagaatgataaatgaaagtttatcattaatatattttt 35586218  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 42157733 - 42157784
Alignment:
Q  61 agtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 112  Q
    |||| ||||| ||| |||||||||||||||||||||||| ||||| ||||||    
T  42157733 agtgcttttgcagagaatgataaatgaatgtttatcattcatatatttttaa 42157784  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 1175862 - 1175912
Alignment:
Q  62 gtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 112  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  1175862 gtgtttttgtagagaatgataaatgaatgtttatgattaatatatttttaa 1175912  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 12150738 - 12150688
Alignment:
Q  62 gtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 112  Q
    ||||||||||||||||||||||||||||  |||| ||||||||| ||||||    
T  12150738 gtgtttttgtagataatgataaatgaatacttatgattaatatatttttaa 12150688  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 13839473 - 13839540
Alignment:
Q  59 atagtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaattttggaagtattat 128  Q
    |||||| ||||||||| |||||||||||||| ||||| ||||||||  |||||| |||||  ||||||||    
T  13839473 atagtggttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattat 13839540  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 33740020 - 33740066
Alignment:
Q  65 tttttgtagataatgataaatgaatgtttatcattaatatactttta 111  Q
    ||||| ||||||||||||||| ||||||||| ||||||||| |||||    
T  33740020 tttttttagataatgataaatcaatgtttataattaatataatttta 33740066  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 32874894 - 32874844
Alignment:
Q  66 ttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 117  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  32874894 ttttgtagataatgaaaaatgaatgtttatgattaatata-ttttaaatttt 32874844  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 39418216 - 39418173
Alignment:
Q  62 gtgtttttgtagataatgataaatgaatgtttatcattaatata 105  Q
    ||||||||||||  |||||||||||||||||||| |||||||||    
T  39418216 gtgtttttgtagggaatgataaatgaatgtttatgattaatata 39418173  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 13858488 - 13858445
Alignment:
Q  61 agtgtttttgtagataatgataaatgaatgtttatcattaatat 104  Q
    |||||||||||||||||||||||||||||| |||| ||||||||    
T  13858488 agtgtttttgtagataatgataaatgaatgcttatgattaatat 13858445  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 7181389 - 7181438
Alignment:
Q  63 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 112  Q
    |||||||||||| ||||||||| ||||| |||| ||||||||| ||||||    
T  7181389 tgtttttgtagagaatgataaaagaatgcttatgattaatatatttttaa 7181438  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 45471832 - 45471900
Alignment:
Q  62 gtgtttttgtagataatgataaatgaa-tgtttatcattaatatacttttaaattttggaagtattatta 130  Q
    ||||||||||||||||| |||||||||  | |||||||||||||| |||| |||||||  ||||||||||    
T  45471832 gtgtttttgtagataataataaatgaacagcttatcattaatata-tttttaattttgagagtattatta 45471900  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 56439290 - 56439344
Alignment:
Q  63 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 117  Q
    |||| ||||||| ||||||| ||||||||| |||||||||||| |||||| ||||    
T  56439290 tgttattgtagagaatgatagatgaatgttaatcattaatatatttttaattttt 56439344  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 34713117 - 34713068
Alignment:
Q  61 agtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 112  Q
    ||||||||||||||   |||||||||||||||||| ||||||||| ||||||    
T  34713117 agtgtttttgtagag--tgataaatgaatgtttatgattaatatatttttaa 34713068  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 5193229 - 5193176
Alignment:
Q  63 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 117  Q
    |||||||||| | ||| |||||||||||||||| ||||||||| |||||||||||    
T  5193229 tgtttttgtacagaataataaatgaatgtttatgattaatata-ttttaaatttt 5193176  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 38216438 - 38216488
Alignment:
Q  67 tttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 117  Q
    |||||||| ||||||| |||||||||||| ||||||||| |||||| ||||    
T  38216438 tttgtagagaatgatagatgaatgtttatgattaatatatttttaattttt 38216488  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 6695458 - 6695406
Alignment:
Q  65 tttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 117  Q
    ||||| |||| ||||||||||||||| |||| ||||||||| |||| ||||||    
T  6695458 tttttttagagaatgataaatgaatgcttataattaatataatttttaatttt 6695406  T

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