View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_high_98 (Length: 241)
Name: NF11928_high_98
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_high_98 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 10485035 - 10484811
Alignment:
| Q |
18 |
cacatcaatggttacactagcgtagcatactcttaggtaccagagtgttcaccttatttaaaaccttatttgtatatcgtgatttcaagcaacacctgaa |
117 |
Q |
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| T |
10485035 |
cacatcaatggttacactagcgtagcatactcttaggtaccagagtgttcaccttatttaaaaccttgtttgtatatcgtgatttcaagcaacacctgaa |
10484936 |
T |
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| Q |
118 |
acattgacaccacttgatgacattatccacattagtgacatgaatgaaagaccatgatgccttnnnnnnnnncctcagccacagtgttt-atgtttttag |
216 |
Q |
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| T |
10484935 |
acattgacaccacttgatgacattatccacattagtgacatgaatgaaagaccatgatgccctaaaaaaaaacctcagccacagtgtttaatgtttttag |
10484836 |
T |
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| Q |
217 |
tggatacccttttgattatatgttt |
241 |
Q |
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| T |
10484835 |
tggatactcttttgattatatgttt |
10484811 |
T |
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Target: scaffold0010 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 223980 - 223867
Alignment:
| Q |
53 |
ggtaccagagtgttcaccttatttaaaaccttatttgtatatcgtgatttcaagc--aacacctgaaacattgacaccacttgatgacattatccacatt |
150 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||| || ||||||| |||||||||| ||||| ||||||||||||| |||||| ||||| |
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| T |
223980 |
ggtaccagagtgtttaccttatttaaaacctt----gtatatcgcgaattcaagcgaaacacctgaagcattggcaccacttgatgatattatctacatt |
223885 |
T |
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| Q |
151 |
agtgacatgaatgaaaga |
168 |
Q |
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| T |
223884 |
agtgacatgaatgaaaga |
223867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 4950870 - 4950963
Alignment:
| Q |
18 |
cacatcaatggttacactagcgtagcatactcttaggtaccagagtgttcaccttatttaaaaccttatttgtatatcgtgatttcaagcaacacctg |
115 |
Q |
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||||||||||||| || | |||| ||| |||||| ||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||| |
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| T |
4950870 |
cacatcaatggttgcatttgcgtcgcaaactcttgggtaccagagtgttcaccttatttacaacc----ttgtatattgtgatttcaagcgacacctg |
4950963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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