View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_10 (Length: 684)
Name: NF11928_low_10
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 37337859 - 37337524
Alignment:
| Q |
1 |
aatgaatccaaacccatgagtctggctactagccctgggggtttatcacacccttcatcatcatcactgctaattgataataaggcaaagttaaaatcag |
100 |
Q |
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| T |
37337859 |
aatgaatccaaacccatgagtctggctactagccctgggggtttatcacacccttcatcatcatcactactaattgataataaggcaaagttaaaatcag |
37337760 |
T |
|
| Q |
101 |
tacttgcaatattactaggattttctccattctcatccatctttatctgaaacaattgtaataataataagaaagggtcgtgctaacaaattctataagg |
200 |
Q |
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| T |
37337759 |
tacttgcaatattactaggattttctccattctcatccatctttatctgaaacaattgtaataataataagaaagggtcgtgctaacaaattccgtaagg |
37337660 |
T |
|
| Q |
201 |
gcacttgttaagaagcttaaaaaggaagttttaagtagaaaaagtcaatttctaaagtttcaaagcccatcatttccaagataaaatttctagtttaaac |
300 |
Q |
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| T |
37337659 |
gcacttgttaagaagcttaaaaaggaagttttaagtagaaaaagtcaatttctaaagtttcaaagcccatcatttccaagataaaatttctagtttaaac |
37337560 |
T |
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| Q |
301 |
ataacaaatgacattagggccctgtttaacatttct |
336 |
Q |
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| T |
37337559 |
ataacaaatgtcattagggccctgtttaacatttct |
37337524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 419 - 667
Target Start/End: Complemental strand, 37337441 - 37337193
Alignment:
| Q |
419 |
tcacactggtgtttacctgtgacattggcatgatttcaatgttttcctttgcgtggtttgaaacatctacagaaaaatgagcaaaaatattcagaatagg |
518 |
Q |
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| T |
37337441 |
tcacactggtgtttacctgtgacattggcatgatttcaatgttttcctttgcgtggtttgaaacatctacagaaaaatgagcaaaaatattcagaatagg |
37337342 |
T |
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| Q |
519 |
aacatcacattcacagacactagaaagaatgaaactatatatattaaagactagaaataattgccaggtaagttaggattgtaacaaaggagtttctttg |
618 |
Q |
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| T |
37337341 |
aacatcacattcacagacactagaaagaatgaaactatatatattaaagactagaaataattgccaggtaagttaggattgtaacaaaggagtttctttg |
37337242 |
T |
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| Q |
619 |
gagattttccattccgatcaaagaagctaaggaagctaccacttctttt |
667 |
Q |
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| T |
37337241 |
gagattttccattccgatcaaagaagctaaggaagctaccacttctttt |
37337193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 46056454 - 46056406
Alignment:
| Q |
109 |
atattactaggattttctccattctcatccatctttatctgaaacaatt |
157 |
Q |
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|||||||| ||| || ||||||||||||||| |||||||| |||||||| |
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| T |
46056454 |
atattactcggacttgctccattctcatccacctttatctaaaacaatt |
46056406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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