View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_105 (Length: 239)
Name: NF11928_low_105
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 11834524 - 11834736
Alignment:
| Q |
11 |
actcaaaatcaaaacccattttcttatcaacaaaaagataagatttttacaacaattctaacaaaattcaaaatgggttttggagtttccatcaatcttc |
110 |
Q |
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| T |
11834524 |
actcaaaatcaaaacccattttcatatcaacaaaaagataagatttttacaacaattctaacaaaattcaaaatgggttttggagtttccatcaatcttc |
11834623 |
T |
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| Q |
111 |
accttgttttgctcttttccatgatctttgtttctgcatggtcacaagatgatgctgcaatgcaaaagctgaaaacttcaatcaaatcatcaagcagtaa |
210 |
Q |
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| T |
11834624 |
accttgttttgctcttttccatgatctttgtttctgcatggtcacaagatgatgctgcaatgcaaaagctgaaaacttcaatcaaatcatcaagcagtaa |
11834723 |
T |
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| Q |
211 |
tcttgattggtca |
223 |
Q |
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||||||||||||| |
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| T |
11834724 |
tcttgattggtca |
11834736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 11859145 - 11859028
Alignment:
| Q |
106 |
tcttcaccttgttttgctcttttccatgatctttgtttctgcatggtcacaagatgatgctgcaatgcaaaagctgaaaacttcaatcaaatcatcaagc |
205 |
Q |
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| T |
11859145 |
tcttcaccttgttgtgttgttttctatgatgtttgtttctgcatggtctcaagatgatgttgttatgcaaaagctgaaaagttctataaaatcatcaagc |
11859046 |
T |
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| Q |
206 |
agtaatcttgattggtca |
223 |
Q |
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| T |
11859045 |
aatgatcttgattggtca |
11859028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 11847978 - 11848122
Alignment:
| Q |
79 |
caaaatgggttttggagtttccatcaatcttcaccttgttttgctcttttccatgatctttgtttctgcatggtcacaagatgatgctgcaatgcaaaag |
178 |
Q |
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||||||| |||||||||||||| ||||||||||||||| || |||| ||||| ||| || |||||||||| |||||||| | || ||||||||| |
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| T |
11847978 |
caaaatgagttttggagtttcctatgttcttcaccttgttttactgttttttatgatgtttattgctgcatggtctcaagatgacgttgttatgcaaaag |
11848077 |
T |
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| Q |
179 |
ctgaaaacttcaatcaaatcatcaagcagtaatcttgattggtca |
223 |
Q |
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| T |
11848078 |
ctgaaaagttctataacatcatcaagcaatgatcttgattggtca |
11848122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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