View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_11 (Length: 668)

Name: NF11928_low_11
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_11
NF11928_low_11
[»] chr2 (5 HSPs)
chr2 (14-650)||(28414610-28415242)
chr2 (66-382)||(29845886-29846196)
chr2 (64-339)||(29861522-29861797)
chr2 (66-226)||(22114565-22114725)
chr2 (107-213)||(19005659-19005764)
[»] chr4 (1 HSPs)
chr4 (123-352)||(12882344-12882573)
[»] chr1 (4 HSPs)
chr1 (66-219)||(18350553-18350708)
chr1 (269-402)||(26471857-26471989)
chr1 (66-217)||(10683737-10683890)
chr1 (280-351)||(25144579-25144650)
[»] chr3 (1 HSPs)
chr3 (269-454)||(23294258-23294441)
[»] chr5 (2 HSPs)
chr5 (292-353)||(6975335-6975396)
chr5 (106-171)||(6987276-6987341)


Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 14 - 650
Target Start/End: Original strand, 28414610 - 28415242
Alignment:
Q  14 gcacagataaacctgaaatgtatctaatagaccttaggcatactaagtcaaag-attatcttgtatgatcctaggttatagtacaaggtcgaattacctt 112  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  28414610 gcacaaataaacctgaattgtatctaatagaccttaggcatactaagtcaaaggattatcttgtatgatcctaggttatagtacaatgtcgaattacctt 28414709  T
Q  113 tctttaacccaaacaataattaaaatagaaagttgcttaattatcttaatcaaattagggtttatgaataagatattagatcatgattcatcctttgaga 212  Q
    || ||||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28414710 tcattaacccaaacaataattaaaatagaaagttacttgattatgttaatcagattagggtttatgaataagatattagatcatgattcatcctttgaga 28414809  T
Q  213 acttacttggtatctctctaattaagcagaatatccataagtaatttgattgatatatcacggtttcataatttaaaatatcgtttatcaagtaattagt 312  Q
    |||||||||||||||||||| |||||||||||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    ||    
T  28414810 acttacttggtatctctctagttaagcagaattaccataagtaattcgattgatatatcacggtttcataattcaaaatatcgtttatcaagta----gt 28414905  T
Q  313 cataactagtattgaatattgcattaatttgacaaagaagatgcagggtattcaaagaatcctaatcaccatctaacctctaaatcaaacatcttttatt 412  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28414906 cataattagtattgaatattgcatcaatttgacaaagaagatgcagggtattcagagaatcctaatcaccatctaacctctaaatcaagcatcttttatt 28415005  T
Q  413 atcagcaaactactactcacattaagcacacaattcaaaagtgaaacccctttaacccctttaattcatttctagtttgtataaattaagtgaattgcta 512  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28415006 atcagcaaactactacttacattgagcacacaattcaaaagtgaaacccctttaacccctttaattcatttctagtttgtataagttaagtgaattgcta 28415105  T
Q  513 agttgatgacaatctctatcgagataataaacttactactttattatttctaatatcattggattcattcttttctatcattcttttatgtgttttctaa 612  Q
    |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28415106 agttgacgacaatctctatcgagataataaagttactattttattatttctaatatcattggattcattcttttc-atcattcttttatgtgttttctaa 28415204  T
Q  613 atatcccattatgaagtccattattatcttatatgatg 650  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28415205 atatcccattatgaagtccattattatcttatatgatg 28415242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 66 - 382
Target Start/End: Complemental strand, 29846196 - 29845886
Alignment:
Q  66 gattatcttgtatgatc-ctaggttatagtacaaggtcgaattacctttctttaacccaaacaataattaaaatagaaagttgcttaattatcttaatca 164  Q
    ||||||||| ||||||| ||||||||  ||| | ||| || ||||||| |||||||||||||      |||||  |||| |||||||  |||||||||||    
T  29846196 gattatcttatatgatctctaggttaaggtatatggttgatttaccttgctttaacccaaac------taaaactgaaacttgcttatatatcttaatca 29846103  T
Q  165 aattagggtttatgaataagatattagatcatgattcatcctttgagaacttacttggtatctctctaattaagcagaatatccataagtaatttgattg 264  Q
    ||||||||||| | | || |||||||||| |||| ||||| |||||| | |||||| ||| | ||||| ||||| | | |  ||||||||||| | || |    
T  29846102 aattagggtttttaagtatgatattagattatgaatcatcttttgagtatttactttgtaccactctatttaagaatagttaccataagtaatctcatag 29846003  T
Q  265 atatatcacggtttcataatttaaaatatcgtttatcaagtaattagtcataactagtattgaatattgcattaatttgacaaagaagatgcagggtatt 364  Q
    ||  ||||||||||||||| | ||| || ||||||||||||| |||||||||| | | ||  |||||||||||||   |||||||||||   || | |||    
T  29846002 attcatcacggtttcataa-tcaaactaccgtttatcaagtatttagtcataattggaataaaatattgcattaaaccgacaaagaagaaagagagaatt 29845904  T
Q  365 caaagaatcctaatcacc 382  Q
    |||||||| |||||||||    
T  29845903 caaagaattctaatcacc 29845886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 64 - 339
Target Start/End: Complemental strand, 29861797 - 29861522
Alignment:
Q  64 aagattatcttgtatgatc-ctaggttatagtacaaggtcgaattacctttctttaacccaaacaataattaaaatagaaagttgcttaattatcttaat 162  Q
    ||||||||||| ||||||| ||||||||  ||| | ||  || ||| |||||||||||| |||| | || |||||| ||||||||||||  |||||||||    
T  29861797 aagattatcttatatgatcactaggttaaggtatatggctgacttaactttctttaacctaaacgaaaactaaaattgaaagttgcttatatatcttaat 29861698  T
Q  163 caaattagggtttatgaataagatattagatcatgattcatcctttgagaacttacttggtatctctctaattaagca-gaatatccataagtaatttga 261  Q
    ||||||||||||  | | || ||||||| || |||| |||||||||||| | |||||| ||| | ||||| ||||| | |  ||| |||| ||||||| |    
T  29861697 caaattagggttcttaagtatgatattatattatgaatcatcctttgagtatttactttgtaccactctatttaagaatggttat-cataggtaatttca 29861599  T
Q  262 ttgatatatcacggtttcataatttaaaatatcgtttatcaagtaattagtcataactagtattgaatattgcattaa 339  Q
    | |||  ||||||||||||||| | ||| || |||||||||||||  ||||||||| | | ||  |||||||||||||    
T  29861598 tagattcatcacggtttcataa-tcaaattaccgtttatcaagtacatagtcataattggaataaaatattgcattaa 29861522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 226
Target Start/End: Complemental strand, 22114725 - 22114565
Alignment:
Q  66 gattatcttgtatgatcc-taggttatagtacaaggtcgaattacctttctttaacccaaacaataattaaaatagaaagttgcttaattatcttaatca 164  Q
    |||||||||||||||||| || ||||||||| ||||| || ||||||| |||||||   ||||| |  |||||  ||||||| |||| ||||||||||||    
T  22114725 gattatcttgtatgatccctaagttatagtataaggttgacttaccttactttaacatgaacaagagctaaaaatgaaagtttcttatttatcttaatca 22114626  T
Q  165 aattagggtttatgaataagatattagatcatgattcatcctttgagaacttacttggtatc 226  Q
    ||| ||||||| | |  | ||| ||| || ||||||| ||| |||||||||||||| |||||    
T  22114625 aataagggttt-taagcatgatgttaaattatgattcttccattgagaacttactttgtatc 22114565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 19005764 - 19005659
Alignment:
Q  107 tacctttctttaacccaaacaataattaaaatagaaagttgcttaattatcttaatcaaattagggtttatgaataaga-tattagatcatgattcatcc 205  Q
    |||||| ||||||| | ||||| |||  |||| |||||||| ||||| ||||||||||||||||||||| | | || || | |||||| |||||||||||    
T  19005764 taccttgctttaacacgaacaagaat--aaattgaaagttggttaatcatcttaatcaaattagggtttttaagtatgattgttagattatgattcatcc 19005667  T
Q  206 tttgagaa 213  Q
    ||||||||    
T  19005666 tttgagaa 19005659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 123 - 352
Target Start/End: Complemental strand, 12882573 - 12882344
Alignment:
Q  123 aaacaataattaaaatagaaagttgcttaattatcttaatcaaattagggtttatgaataagatattaga-tcatgattcatcctttgagaacttacttg 221  Q
    |||||| || |||||| |||| ||||||| |||||| |||||||||||||||| | | || ||| ||||| | ||||||||||| ||||||| ||||||     
T  12882573 aaacaagaactaaaattgaaaattgcttatttatctcaatcaaattagggtttctaagtatgatgttagatttatgattcatccgttgagaatttacttc 12882474  T
Q  222 gtatctctctaattaagcagaatatccataagtaatttgattgatatatcacggtttcataatttaaaatatcgtttatcaagtaattagtcataactag 321  Q
    ||| | ||||| ||||| | |||  ||||| ||||||   |  ||  |||||  |||||||| |||||  ||||||||||||||| ||| |||||  |      
T  12882473 gtaccactctagttaagaacaattaccatatgtaattatgtatattcatcacaatttcataa-ttaaaccatcgtttatcaagtatttaatcatagttca 12882375  T
Q  322 tattgaatattgcattaatttgacaaagaag 352  Q
    |||||||||||| |||| |||||||||||||    
T  12882374 tattgaatattgtattactttgacaaagaag 12882344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 219
Target Start/End: Original strand, 18350553 - 18350708
Alignment:
Q  66 gattatcttgtatgat-cctaggttatagtacaaggtcgaattacctttctttaacccaaacaataattaaaatagaaagttgcttaattatcttaatca 164  Q
    |||||||||||| ||| ||||||||||  || ||||  ||  |||| | ||||||||||||||| || |||||| ||||||| ||||||||||||||||     
T  18350553 gattatcttgtacgattcctaggttatgatataaggctgacataccgtactttaacccaaacaagaactaaaattgaaagtttcttaattatcttaatcg 18350652  T
Q  165 aattagggtttatgaataaga-tattagatcatgattcatcctttgagaacttact 219  Q
    || |||| ||| | | || || | |||||| |||| ||||| ||||||||||||||    
T  18350653 aaataggatttttaagtatgattgttagattatgagtcatcatttgagaacttact 18350708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 402
Target Start/End: Complemental strand, 26471989 - 26471857
Alignment:
Q  269 atcacggtttcataatttaaaatatcgtttatcaagtaattagtcataactagtattgaatattgcattaatttgacaaagaagatgcagggtattcaaa 368  Q
    ||||||||||||||||| | | | ||||||||||||   ||| |||||| ||||||| |||||| |||||||   | |||||||||  |||| |||| ||    
T  26471989 atcacggtttcataattgaca-tgtcgtttatcaagcgcttaatcataattagtattaaatattacattaatccaataaagaagatagaggggattcgaa 26471891  T
Q  369 gaatcctaatcaccatctaacctctaaatcaaac 402  Q
    |||||||||||| | |||||||||| || |||||    
T  26471890 gaatcctaatcatcgtctaacctctgaaacaaac 26471857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 10683737 - 10683890
Alignment:
Q  66 gattatcttgtatgatcctagg-ttatagtacaaggtcgaattacctttctttaacccaaacaataattaaaatagaaagttgcttaattatcttaatca 164  Q
    ||||||||| |||||||||||| ||||  || ||||  ||  |||||| |||| |||| ||||| || |||||| |||||||  ||||||||||||||      
T  10683737 gattatcttctatgatcctagggttatgatataaggctgacataccttgctttcacccgaacaagaactaaaattgaaagttttttaattatcttaattg 10683836  T
Q  165 aattagggtttatgaataaga-tattagatcatgattcatcctttgagaactta 217  Q
    ||||||||||| | | || || | |||||| ||||| |||| ||||||||||||    
T  10683837 aattagggtttttaagtatgattgttagattatgatccatcttttgagaactta 10683890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 25144579 - 25144650
Alignment:
Q  280 ataatttaaaatatcgtttatcaagtaattagtcataactagtattgaatattgcattaatttgacaaagaa 351  Q
    ||||| |||||| | ||| |||||||| ||||| |||| |||||| |||||||||||||||  |||||||||    
T  25144579 ataatctaaaatgtagttgatcaagtacttagtgataattagtatagaatattgcattaatccgacaaagaa 25144650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 454
Target Start/End: Original strand, 23294258 - 23294441
Alignment:
Q  269 atcacggtttcataatttaaaatatcgtttatcaagtaattagtcataactagtattgaatattgcattaatttgacaaagaagatgcagggtattcaaa 368  Q
    ||||||||||||||||  || | ||||||||||||| | ||| |||||| ||||||| |||||||||||| |  |||||||||||   ||   |||  ||    
T  23294258 atcacggtttcataatc-aacacatcgtttatcaagaatttaatcataattagtattaaatattgcattactccgacaaagaagacaaagataatttgaa 23294356  T
Q  369 gaatcctaatcaccatctaacctctaaatcaaacatcttttattatcagcaaactactactcacattaagcacacaattcaaaagt 454  Q
    |||||||||||||| |||||||| | || ||||| |||||  || || |||||  ||||| || ||| ||||||||||| ||||||    
T  23294357 gaatcctaatcaccgtctaacctatgaaacaaac-tctttacttttctgcaaataactacacatattgagcacacaattaaaaagt 23294441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 6975396 - 6975335
Alignment:
Q  292 atcgtttatcaagtaattagtcataactagtattgaatattgcattaatttgacaaagaaga 353  Q
    ||||||||| ||||| |||||||||| | ||||||||||||| |||||| ||| | ||||||    
T  6975396 atcgtttattaagtacttagtcataattggtattgaatattggattaatatgaaatagaaga 6975335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 6987341 - 6987276
Alignment:
Q  106 ttacctttctttaacccaaacaataattaaaatagaaagttgcttaattatcttaatcaaattagg 171  Q
    ||||||| | |||||| | |||| || |||||| ||||||||||||||||||| |||| |||||||    
T  6987341 ttaccttgcattaacctagacaacaactaaaattgaaagttgcttaattatctaaatcgaattagg 6987276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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