View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_110 (Length: 229)
Name: NF11928_low_110
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 21642823 - 21642606
Alignment:
| Q |
7 |
acaattttatcaatagtgatatcataagcaggatcaggtaaatataatccagcttctttagacttaaatttcctataacttggaaaagtaaaatcctttt |
106 |
Q |
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| T |
21642823 |
acaattttatcaatagtgatatcataagcaggatcaggtaaatataatccagcttctttagacttaaatttcctataacttggaaaagtaaagtcctttt |
21642724 |
T |
|
| Q |
107 |
gtctaaatggcaatatcctcccaatactccccaaaactgaattcttatacttttcagtccctgcaacatgtgccaaaatctccaacattttctttccagg |
206 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
21642723 |
gtctaaatggcaatatcctcccaatacttcccaaaactgaattcttatacttttcagtcccagctacatgtgccaaaatctccaacattttctttccagg |
21642624 |
T |
|
| Q |
207 |
tatcatatcatcatcaac |
224 |
Q |
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|||||||||||||||||| |
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| T |
21642623 |
tatcatatcatcatcaac |
21642606 |
T |
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