View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_112 (Length: 229)
Name: NF11928_low_112
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_112 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 54183020 - 54183241
Alignment:
| Q |
7 |
gaaacattcctaaagtaaataggcctagattttaacaaacaatggtaggtaaataaattcaatttggataagtattacatctttataggatgttgaatat |
106 |
Q |
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| T |
54183020 |
gaaacattcctaaagtaaataggcctagattttaacaaacaatggtaggtaaataaaatcaatttgtataagtattacatctttataggatgttgaatat |
54183119 |
T |
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| Q |
107 |
cagtagtagttaannnnnnnactttattttgcaatatcccttgtttttagcttttactagtacaacctcagttttactagcatgctaaatagtgttagc- |
205 |
Q |
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| T |
54183120 |
c---agtagttaattttttgactttattttgcaatatcccttgtttttagcttttactagtacaacctcagttttactagcatgctaaatagtgttagca |
54183216 |
T |
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| Q |
206 |
-atctaatcatgaaaagagaaacaa |
229 |
Q |
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| T |
54183217 |
tatttaatcatgaaaagagaaacaa |
54183241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 2334138 - 2333984
Alignment:
| Q |
65 |
tcaatttggataagtattacatctttataggatgttgaatatcagtagtagttaannnnnnnactttattt-tgcaatatcccttgtttttagcttttac |
163 |
Q |
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| T |
2334138 |
tcaatttggataagtaatacgtctttataggatgttgaatatcagtagt---taattttttgactttatttatgcaat-------gtttctagcttt-ac |
2334050 |
T |
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| Q |
164 |
tagtacaacctcagttttactagcatgctaaatagtgttagcatctaatcatgaaaagagaaacaa |
229 |
Q |
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| T |
2334049 |
tagtgcaacctcagttttactaaaatgctaaatagtgttagcatttaatcatgaaaagagaaacaa |
2333984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 2334209 - 2334165
Alignment:
| Q |
28 |
ggcctagattttaacaaacaatggtaggtaaataaattcaatttg |
72 |
Q |
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| T |
2334209 |
ggccaagattttaacaaacaatggtaggtaaataaaatcaatttg |
2334165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 45282638 - 45282602
Alignment:
| Q |
28 |
ggcctagattttaacaaacaatggtaggtaaataaat |
64 |
Q |
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| T |
45282638 |
ggcctagattttaacaaacaatggtaggtaaataaat |
45282602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 45282536 - 45282490
Alignment:
| Q |
183 |
ctagcatgctaaatagtgttagcatctaatcatgaaaagagaaacaa |
229 |
Q |
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| T |
45282536 |
ctagcatgctaaatagtgttagcatttaatcataaaaagagagacaa |
45282490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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