View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_12 (Length: 643)
Name: NF11928_low_12
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Complemental strand, 13135188 - 13134647
Alignment:
| Q |
19 |
ccccctgcataatcccttagtcttttgataatctattgtttttgtcgggacaatatgtgtttgtcacaatcacgttgaatcaccgtaatttgcagtaann |
118 |
Q |
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| T |
13135188 |
ccccctgcataatcccttagtcttttgataatctattgtttttgtcgggacaatatgtgtttgtcataatcacgttgaatcaccgtaatttgcagtaatt |
13135089 |
T |
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| Q |
119 |
nnnnngtaaaaatatggtagcttactaccaagtttatgacaaacacattgtgatacaagacatgtatgaatacaaacaacaattgatggcaaaatgcata |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13135088 |
tttttgtaaaaatatggtaacttactaccaagtttatgacaaacacattgtgatacaagacatgtatgaatacaaacaa---ttgatggcaaaatgcata |
13134992 |
T |
|
| Q |
219 |
tgcacattaatttttctatgcacacggcaagttaattaacatgctacggtggtggtcatggtggtttggacgatggcttctcgatgttgacaataatctc |
318 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13134991 |
tgcaca------------------cggcaagttaattaacatgctacggtggtggtcatggtggtttggacgatggcttctcgatgttgacaataatctc |
13134910 |
T |
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| Q |
319 |
ttctagccgcgaatgctgacacgggcaaggcatggctataaactttggtacctcatccccaggcatcaacaccgttaaactttgccccttcttttccccc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13134909 |
ttctagccgcgaatgctgacacgggcaaggcatggctataaactttggtacctcatccccaggcatcaacaccgttaaactttgccccttcttttccccc |
13134810 |
T |
|
| Q |
419 |
tccgtttcctatccacgaagaaacaaaatagtaaattcaaattaggtacaataatagtcacaaagcgcaagtttagtaataaaagcttgaccgtgacgtt |
518 |
Q |
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| T |
13134809 |
tccgtttcctatccacgaagaaacaaaaaagtaaattcaaattagttacaacaatagtcacaaagcgccagtttagtactaaaagcttgaccttgacgtt |
13134710 |
T |
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| Q |
519 |
gtaagaggaaaaagtatcatacaactgtaaaatggtcgttagaatcttgaaaattaattatag |
581 |
Q |
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| T |
13134709 |
gtaagaggaaaaagtatcatacaactgtaaaatggtcgttagaatcttgaaaattaattatag |
13134647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 251 - 495
Target Start/End: Original strand, 30252063 - 30252311
Alignment:
| Q |
251 |
taattaacatgctacggtggtggtcatggtggtttggacgatggcttctcgatgttgacaataatctcttctagccgcgaatgctgacacgggcaaggca |
350 |
Q |
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| T |
30252063 |
taattaacatactacaatggtgatcaccgtggtttggtcggtggcttctcgatgttgacaataatctcttctagctgcgaatgccgacacgggcaaggca |
30252162 |
T |
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| Q |
351 |
---tggctataaactttggtacctcatccccaggcatcaacaccgttaaactttgccccttcttttccccctccgtttcctatccacgaagaaacaaaat |
447 |
Q |
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| T |
30252163 |
gcatggctataaacttcggtacctcatcccctgacatcaacaccgtcacactctgccccttcttttccccctccatttcctattcaccaacaaacaaaat |
30252262 |
T |
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| Q |
448 |
agt-aaattcaaattaggtacaataatagtcacaaagcgcaagtttagt |
495 |
Q |
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| T |
30252263 |
tgtaaaattcaaattagttacaataatagtcacaaagcgcgaatttagt |
30252311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 30251825 - 30251911
Alignment:
| Q |
22 |
cctgcataatcccttagtcttttgataatctattgtttttgtcgggacaatatgtgtttgtcacaatcacgttgaatcaccgtaattt |
109 |
Q |
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| T |
30251825 |
cctgcataatcctttggtctttttataatatatctttttcgtcgggacaa-atgtgtttggcacaatcacgttgaatcatcgtaattt |
30251911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 30251940 - 30252028
Alignment:
| Q |
151 |
tttatgacaaacacattgtgatacaagacatgtatgaatacaaacaacaattgatggcaaaatgcatatgcacattaatttttctatgcaca |
242 |
Q |
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||||||||||||||||| ||||| |||||||||| |||||| |||||||| | || |||||||||| |||||||||| |||||| |||| |
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| T |
30251940 |
tttatgacaaacacattctgatatgagacatgtatcaataca---aacaattggttgcgaaatgcatatacacattaattcttctatacaca |
30252028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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