View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_120 (Length: 208)
Name: NF11928_low_120
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_120 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 32604779 - 32604606
Alignment:
| Q |
15 |
cagagacgcgtgccgtcgtttaatttgtcttgggaatttacnnnnnnngaaaatgttggtttcaacccatgtcaaatctcgtcacacattttgctaacat |
114 |
Q |
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| T |
32604779 |
cagagacgcgtgccgtcgtttaatttgtcttgggaatttactttttttgaaa-tgttggtttcaacccatgtcaaatctcgtcgcacattttgctaacat |
32604681 |
T |
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| Q |
115 |
cattgtacgttcgaccttccattttctatcgtatgtgcaatctgagccatcttgttttttactcttattgttttc |
189 |
Q |
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|||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32604680 |
cattgtgcgttcgaccttccattttctatggtatgtgcaacctgagccatcttgttttttactcttattgttttc |
32604606 |
T |
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