View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_13 (Length: 607)
Name: NF11928_low_13
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 14 - 590
Target Start/End: Original strand, 25898381 - 25898962
Alignment:
| Q |
14 |
cataggaacaatattaaagcacacaacttataggaacataggaattaggagtatcatggtagaaaatctcaaaacacaatgccattgtctgaggcataac |
113 |
Q |
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| T |
25898381 |
cataggaacaatattaaagcacacaacttataggaacataggaattaggagtatcatgggagaaaaactcaaaacacaatgccattgtctgaggcataac |
25898480 |
T |
|
| Q |
114 |
atgtatttgcaacaaaataaaacacatgaagaggaacctcatatgatatgcttgtaagtctaatgacgacctttctggcgaacaatctcaacaaatagtg |
213 |
Q |
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| T |
25898481 |
aggtatttacaacaaaataaaacacatgaagaggaaccttatatgatatgcttgcaagtctaatgacgacctttctggcgaacaatctcaacaaatagtg |
25898580 |
T |
|
| Q |
214 |
agttaggaggatcctcaagatcaaagaccaagctatccccctgacgcaatttactatccttcagaaatttgttccaatcttcctctaaatatttttcatt |
313 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25898581 |
agttaggaggatcctcaagatcaaagaccaaactatccccttgacgcaatttactatccttcagaaatttgttccaatcttcctctaaatatttttcatt |
25898680 |
T |
|
| Q |
314 |
cggacctctatttcaagtgataagtttgcagtcatattttttggcggtattccaatcctccaatgtaatgctctcttgtgtgtcgggaatgacattgatc |
413 |
Q |
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| T |
25898681 |
cggacccctatttaaagtgataagtttgcagtcatattttttggcggtattccaatcctgcaatgtaatgctctcttgtgtgtcgggaatgacattgatc |
25898780 |
T |
|
| Q |
414 |
gagatcatattggggaagtgctag-----nnnnnnnnnctaacatgctttagtaaccatctaaatatcgaataactaaatcggtaagttatgataatttg |
508 |
Q |
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| T |
25898781 |
gagatcatattggggaagtgctagaaaaaaaaaaaaaactaacatgctttagtaaccaactaaatattgaataactaaatcggtaagttatgataatttg |
25898880 |
T |
|
| Q |
509 |
aaacttttaggagtgtgctaaatgaccatgatgcaattgtgattatagttcaagttgaaatagagttctataagtagaatat |
590 |
Q |
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| T |
25898881 |
aaacttttaggagtgtgctaaatgaccatgatgcaattgtgattatagttcaagttgaaatagagttctataagtagaatat |
25898962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 195 - 437
Target Start/End: Original strand, 37422999 - 37423240
Alignment:
| Q |
195 |
acaatctcaacaaatagtgagttaggaggatcctcaagatcaaagaccaagctatccccctgacgcaatttactatccttcagaaatttgttccaatctt |
294 |
Q |
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|||||||||||||||| ||| | ||||| || | || || |||| ||| ||||||| ||||||||||| |||| |||||||||||||||||||| | |
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| T |
37422999 |
acaatctcaacaaataatgactccggagggtcttgcagttcgaagaacaacctatccctttgacgcaatttgttatc-ttcagaaatttgttccaatcct |
37423097 |
T |
|
| Q |
295 |
cctctaaatatttttcattcggacctctatttcaagtgataagtttgcagtcatattttttggcggtattccaatcctccaatgtaatgctctcttgtgt |
394 |
Q |
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| ||| |||||||||||| ||||| || ||| ||||| |||||||||| || |||| ||| ||||||||||| | | ||||||||| | | ||||| |
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| T |
37423098 |
ctcctagatatttttcatttggacccctgtttgaagtggtaagtttgcactcgtattgtttttgggtattccaattcactaatgtaatggtgtactgtgt |
37423197 |
T |
|
| Q |
395 |
gtcgggaatgacattgatcgagatcatattggggaagtgctag |
437 |
Q |
| |
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||| |||| || ||||| |||||||||||||||||||||||| |
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| T |
37423198 |
gtccggaagtacgttgatggagatcatattggggaagtgctag |
37423240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 46006486 - 46006442
Alignment:
| Q |
14 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
58 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
46006486 |
cataggaacaatattaaagcacataaattataggaacataggaat |
46006442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 12866236 - 12866192
Alignment:
| Q |
14 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
58 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
12866236 |
cataggaacaatattaaagcacataaattataggaacataggaat |
12866192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 12834258 - 12834214
Alignment:
| Q |
14 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
58 |
Q |
| |
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||||||||||||||||||||||| || |||||||||| ||||||| |
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| T |
12834258 |
cataggaacaatattaaagcacataaattataggaacgtaggaat |
12834214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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