View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_15 (Length: 595)

Name: NF11928_low_15
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_15
NF11928_low_15
[»] chr4 (3 HSPs)
chr4 (17-595)||(36790870-36791471)
chr4 (551-595)||(49588179-49588223)
chr4 (565-595)||(17889457-17889487)
[»] chr3 (2 HSPs)
chr3 (529-595)||(21884059-21884125)
chr3 (567-595)||(46446249-46446277)
[»] chr2 (3 HSPs)
chr2 (551-595)||(5900560-5900604)
chr2 (529-595)||(26568373-26568439)
chr2 (565-595)||(43633442-43633472)
[»] chr8 (3 HSPs)
chr8 (566-595)||(31555169-31555198)
chr8 (566-595)||(31558254-31558283)
chr8 (566-595)||(31878271-31878300)
[»] chr6 (1 HSPs)
chr6 (566-595)||(33891627-33891656)
[»] chr5 (7 HSPs)
chr5 (566-595)||(10102839-10102868)
chr5 (566-595)||(10105923-10105952)
chr5 (566-595)||(10109336-10109365)
chr5 (566-595)||(10209773-10209802)
chr5 (566-595)||(12109390-12109419)
chr5 (566-595)||(13856051-13856080)
chr5 (567-595)||(9674763-9674791)
[»] chr1 (8 HSPs)
chr1 (566-595)||(10542427-10542456)
chr1 (566-595)||(43014366-43014395)
chr1 (567-595)||(2176357-2176385)
chr1 (567-595)||(42202430-42202458)
chr1 (567-595)||(42211298-42211326)
chr1 (567-595)||(42409632-42409660)
chr1 (567-595)||(45152028-45152056)
chr1 (567-595)||(45316452-45316480)
[»] chr7 (3 HSPs)
chr7 (567-595)||(3647061-3647089)
chr7 (567-595)||(3649510-3649538)
chr7 (567-595)||(3657627-3657655)


Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 595
Target Start/End: Complemental strand, 36791471 - 36790870
Alignment:
Q  17 cacagactatttatgcttatcccaaccactacttctagtgtctctctctacatataatgtgaatgttgtttgattaacccatttta-----------att 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||           |||    
T  36791471 cacagactatttatgcttatcccaaccactacttctagtgtctctctctacatataatgtgaatgttgtttgatgaacccattttactttttaacttatt 36791372  T
Q  106 ctcaatggcacctactgcagcaatgcttttgctccctcaatattatggaagatcatcaatgaccctgccaccctcatcctcatccccacctaaaaccact 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||    
T  36791371 ctcaatggcacctactgcagcaatgcttttgctccctcaatattatggaagatcatcaatgaccctgccaccctcatcc------ccacctaaaaccact 36791278  T
Q  206 tattttgggatgaaagcctcatcactgaagtattggatcaccaattacatacaatccaggaatcaaaaaccaccagattcacactcatgactgtttgcat 305  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36791277 tattttgggatgaaagcctcatcacttaagtattggatcaccaattacatacaatccaggaatcaaaaaccaccagattcacactcatgactgcttgcat 36791178  T
Q  306 ggttgaggtttgaagatgccctttaactttgcagctgctactaatgtaatgacttatatgatccgtagagcttttgct------------------tgta 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||    
T  36791177 ggttgaggtttgaagatgccctttaactttgcagctgctactaatgtaatgacttatatgatccgtagagcttttgcttgtagttatgttttttcttgta 36791078  T
Q  388 attatgatgttttcttttgacaatatgtaactttgatgttataaaacagcttttgcatatcaaaaatcacttgagtaatctaacttttgcagtagtgtaa 487  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36791077 attatgatgttttcttttgacaataggtaactttgatgttataaaacagcttttgcatatcaaaaatcacttgagtaatctaacttttgcagtagtgtaa 36790978  T
Q  488 aaatttaaactaattgtaggaatcctccatttggaggtttcctttaaaaaattatcatatgctgcttcaagcgacacgcacacggtattctttagtaaaa 587  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||||    
T  36790977 aaatttaaactaattgtaggaatcctccatttgaaggtttcctttaaaaaattatcgtatgctgctttaagcgacgctcacacggtattctttagtaaaa 36790878  T
Q  588 ggcgaaag 595  Q
    ||||||||    
T  36790877 ggcgaaag 36790870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 551 - 595
Target Start/End: Original strand, 49588179 - 49588223
Alignment:
Q  551 gcttcaagcgacacgcacacggtattctttagtaaaaggcgaaag 595  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||    
T  49588179 gcttaaagtgacacgcacacggtattctttagtaaaaggcgaaag 49588223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 565 - 595
Target Start/End: Complemental strand, 17889487 - 17889457
Alignment:
Q  565 gcacacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||||    
T  17889487 gcacacggtattctttagtaaaaggcgaaag 17889457  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 529 - 595
Target Start/End: Original strand, 21884059 - 21884125
Alignment:
Q  529 ctttaaaaaattatcatatgctgcttcaagcgacacgcacacggtattctttagtaaaaggcgaaag 595  Q
    |||| |||||||| | ||||| |||| ||| ||| ||||||||||||||||||||||||||||||||    
T  21884059 ctttcaaaaattaacgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaag 21884125  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Complemental strand, 46446277 - 46446249
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  46446277 acacggtattctttagtaaaaggcgaaag 46446249  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 551 - 595
Target Start/End: Complemental strand, 5900604 - 5900560
Alignment:
Q  551 gcttcaagcgacacgcacacggtattctttagtaaaaggcgaaag 595  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||    
T  5900604 gcttaaagtgacacgcacacggtattctttagtaaaaggcgaaag 5900560  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 595
Target Start/End: Complemental strand, 26568439 - 26568373
Alignment:
Q  529 ctttaaaaaattatcatatgctgcttcaagcgacacgcacacggtattctttagtaaaaggcgaaag 595  Q
    |||| |||||||| | ||||| |||| ||| ||| ||||||||||||||||||||||||||| ||||    
T  26568439 ctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcaaaag 26568373  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 565 - 595
Target Start/End: Original strand, 43633442 - 43633472
Alignment:
Q  565 gcacacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||||    
T  43633442 gcacacggtattctttagtaaaaggcgaaag 43633472  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Original strand, 31555169 - 31555198
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  31555169 cacacggtattctttagtaaaaggcgaaag 31555198  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Original strand, 31558254 - 31558283
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  31558254 cacacggtattctttagtaaaaggcgaaag 31558283  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Complemental strand, 31878300 - 31878271
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  31878300 cacacggtattctttagtaaaaggcgaaag 31878271  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Complemental strand, 33891656 - 33891627
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  33891656 cacacggtattctttagtaaaaggcgaaag 33891627  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Complemental strand, 10102868 - 10102839
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  10102868 cacacggtattctttagtaaaaggcgaaag 10102839  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Complemental strand, 10105952 - 10105923
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  10105952 cacacggtattctttagtaaaaggcgaaag 10105923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Complemental strand, 10109365 - 10109336
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  10109365 cacacggtattctttagtaaaaggcgaaag 10109336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Original strand, 10209773 - 10209802
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  10209773 cacacggtattctttagtaaaaggcgaaag 10209802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Original strand, 12109390 - 12109419
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  12109390 cacacggtattctttagtaaaaggcgaaag 12109419  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Complemental strand, 13856080 - 13856051
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  13856080 cacacggtattctttagtaaaaggcgaaag 13856051  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Original strand, 9674763 - 9674791
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  9674763 acacggtattctttagtaaaaggcgaaag 9674791  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Complemental strand, 10542456 - 10542427
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  10542456 cacacggtattctttagtaaaaggcgaaag 10542427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 595
Target Start/End: Original strand, 43014366 - 43014395
Alignment:
Q  566 cacacggtattctttagtaaaaggcgaaag 595  Q
    ||||||||||||||||||||||||||||||    
T  43014366 cacacggtattctttagtaaaaggcgaaag 43014395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Original strand, 2176357 - 2176385
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  2176357 acacggtattctttagtaaaaggcgaaag 2176385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Original strand, 42202430 - 42202458
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  42202430 acacggtattctttagtaaaaggcgaaag 42202458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Original strand, 42211298 - 42211326
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  42211298 acacggtattctttagtaaaaggcgaaag 42211326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Complemental strand, 42409660 - 42409632
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  42409660 acacggtattctttagtaaaaggcgaaag 42409632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Complemental strand, 45152056 - 45152028
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  45152056 acacggtattctttagtaaaaggcgaaag 45152028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Original strand, 45316452 - 45316480
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  45316452 acacggtattctttagtaaaaggcgaaag 45316480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Complemental strand, 3647089 - 3647061
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  3647089 acacggtattctttagtaaaaggcgaaag 3647061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Complemental strand, 3649538 - 3649510
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  3649538 acacggtattctttagtaaaaggcgaaag 3649510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 567 - 595
Target Start/End: Complemental strand, 3657655 - 3657627
Alignment:
Q  567 acacggtattctttagtaaaaggcgaaag 595  Q
    |||||||||||||||||||||||||||||    
T  3657655 acacggtattctttagtaaaaggcgaaag 3657627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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